Github user vasia commented on a diff in the pull request: https://github.com/apache/flink/pull/847#discussion_r32675011 --- Diff: flink-staging/flink-gelly/src/main/java/org/apache/flink/graph/GraphCsvReader.java --- @@ -0,0 +1,388 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +package org.apache.flink.graph; +import com.google.common.base.Preconditions; +import org.apache.flink.api.common.functions.MapFunction; +import org.apache.flink.api.java.DataSet; +import org.apache.flink.api.java.io.CsvReader; +import org.apache.flink.api.java.tuple.Tuple2; +import org.apache.flink.api.java.tuple.Tuple3; +import org.apache.flink.core.fs.Path; +import org.apache.flink.api.java.ExecutionEnvironment; +import org.apache.flink.graph.Graph; +import org.apache.flink.types.NullValue; +import org.apache.flink.core.fs.Path; + + +/** + * A class to build a Graph using path(s) provided to CSV file(s) with edge (vertices) data + * The class also configures the CSV readers used to read edges(vertices) data such as the field types, + * the delimiters (row and field), the fields that should be included or skipped, and other flags + * such as whether to skip the initial line as the header. + * The configuration is done using the functions provided in The {@link org.apache.flink.api.java.io.CsvReader} class. + */ + + + +public class GraphCsvReader{ + + private final Path path1,path2; + private final ExecutionEnvironment executionContext; + + private Path edgePath; + private Path vertexPath; + protected CsvReader EdgeReader; + protected CsvReader VertexReader; + protected MapFunction mapper; + +//-------------------------------------------------------------------------------------------------------------------- + + public GraphCsvReader(Path path1,Path path2, ExecutionEnvironment context) + { + this.path1 = path1; + this.path2 = path2; + this.VertexReader = new CsvReader(path1,context); + this.EdgeReader = new CsvReader(path2,context); + this.mapper=null; + this.executionContext=context; + } + + public GraphCsvReader(Path path2, ExecutionEnvironment context) + { + this.path1=null; + this.path2 = path2; + this.EdgeReader = new CsvReader(path2,context); + this.VertexReader = null; + this.mapper = null; + this.executionContext=context; + } + + public GraphCsvReader(Path path2,final MapFunction mapper, ExecutionEnvironment context) + { + this.path1=null; + this.path2 = path2; + this.EdgeReader = new CsvReader(path2,context); + this.VertexReader = null; + this.mapper = mapper; + this.executionContext=context; + } + + public GraphCsvReader (String path2,ExecutionEnvironment context) + { + this(new Path(Preconditions.checkNotNull(path2, "The file path may not be null.")), context); + + } + + public GraphCsvReader(String path1, String path2, ExecutionEnvironment context) + { + this(new Path(Preconditions.checkNotNull(path1, "The file path may not be null.")),new Path(Preconditions.checkNotNull(path2, "The file path may not be null.")), context); + } + + + public GraphCsvReader (String path2, final MapFunction mapper, ExecutionEnvironment context) + { + + this(new Path(Preconditions.checkNotNull(path2, "The file path may not be null.")),mapper, context); + + + } + + public CsvReader getEdgeReader() + { + return this.EdgeReader; + } + + public CsvReader getVertexReader() + { + return this.VertexReader; + } + //-------------------------------------------------------------------------------------------------------------------- + + /** + * Specifies the types for the Graph fields and returns a Graph with those field types + * + * This method is overloaded for the case in which Vertices don't have a value + * + * @param type0 The type of CSV field 0 and 1 for the CSV reader used for reading Edge data, the type of CSV field 0 for the CSV reader used for reading Vertex data and the type of Vetex ID in the returned Graph. + * @param type1 The type of CSV field 1 for the CSV reader used for reading Vertex data and the type of Vertex Value in the returned Graph. + * @param type2 The type of CSV field 2 for the CSV reader used for reading Edge data and the type of Edge Value in the returned Graph. + * @return The {@link org.apache.flink.graph.Graph} with Edges and Vertices extracted from the parsed CSV data. + */ + public <K,VV,EV> Graph<K,VV,EV> types(Class<K> type0, Class<VV> type1, Class<EV> type2) + { + DataSet<Tuple3<K,K,EV>> edges = this.EdgeReader.types(type0,type0,type2); + if(path1!=null) + { + DataSet<Tuple2<K,VV>> vertices = this.VertexReader.types(type0,type1); + return Graph.fromTupleDataSet(vertices,edges,executionContext); + } + else + { + return Graph.fromTupleDataSet(edges,mapper,executionContext); + } + + + } + /** + * Specifies the types for the Graph fields and returns a Graph with those field types + * + * This method is overloaded for the case in which Vertices don't have a value + * + * @param type0 The type of CSV field 0 and 1 for the CSV reader used for reading Edge data and the type of Vetex ID in the returned Graph. + * @param type1 The type of CSV field 2 for the CSV reader used for reading Edge data and the type of Edge Value in the returned Graph. + * @return The {@link org.apache.flink.graph.Graph} with Edge extracted from the parsed CSV data and Vertices mapped from Edges with null Value. + */ + public <K, EV> Graph<K,NullValue,EV> types(Class<K> type0, Class<EV> type1) + { + DataSet<Tuple3<K,K,EV>> edges = this.EdgeReader.types(type0,type0,type1); + return Graph.fromTupleDataSet(edges,executionContext); + } + + /** + *Configures the Delimiter that separates rows for the CSV readers used to read the edges and vertices + * ({@code '\n'}) is used by default. + * + *@param delimiter The delimiter that separates the rows. + * @return The GraphCsv reader instance itself, to allow for fluent function chaining. + */ + public GraphCsvReader lineDelimiter(String delimiter) + { + this.EdgeReader.lineDelimiter(delimiter); + this.VertexReader.lineDelimiter(delimiter); + return this; + } + + /** + *Configures the Delimiter that separates fields in a row for the CSV readers used to read the edges and vertices + * ({@code ','}) is used by default. + * + * @param delimiter The delimiter that separates the fields in a row. + * @return The GraphCsv reader instance itself, to allow for fluent function chaining. + */ + @Deprecated + public GraphCsvReader fieldDelimiter(char delimiter) + { + this.EdgeReader.fieldDelimiter(delimiter); + this.VertexReader.fieldDelimiter(delimiter); + return this; + } + + + /** + *Configures the Delimiter that separates fields in a row for the CSV readers used to read the edges and vertices + * ({@code ','}) is used by default. + * + * @param delimiter The delimiter that separates the fields in a row. + * @return The GraphCsv reader instance itself, to allow for fluent function chaining. + */ + public GraphCsvReader fieldDelimiter(String delimiter) + { + this.EdgeReader.fieldDelimiter(delimiter); + this.VertexReader.fieldDelimiter(delimiter); + return this; + } + + /** + * Enables quoted String parsing. Field delimiters in quoted Strings are ignored. + * A String is parsed as quoted if it starts and ends with a quoting character and as unquoted otherwise. + * Leading or tailing whitespaces are not allowed. + * + * @param quoteCharacter The character which is used as quoting character. + * @return The Graph Csv reader instance itself, to allow for fluent function chaining. + */ + + public GraphCsvReader parseQuotedStrings(char quoteCharacter) { + this.EdgeReader.parseQuotedStrings(quoteCharacter); + this.VertexReader.parseQuotedStrings(quoteCharacter); + return this; + } + + /** + * Configures the string that starts comments. + * By default comments will be treated as invalid lines. + * This function only recognizes comments which start at the beginning of the line! + * + * @param commentPrefix The string that starts the comments. + * @return The Graph csv reader instance itself, to allow for fluent function chaining. + */ + + + public GraphCsvReader ignoreComments(String commentPrefix) { + this.EdgeReader.ignoreComments(commentPrefix); + this.VertexReader.ignoreComments(commentPrefix); + return this; + } + + + /** + * Configures which fields of the CSV file containing vertices data should be included and which should be skipped. The + * parser will look at the first {@code n} fields, where {@code n} is the length of the boolean + * array. The parser will skip over all fields where the boolean value at the corresponding position + * in the array is {@code false}. The result contains the fields where the corresponding position in + * the boolean array is {@code true}. + * The number of fields in the result is consequently equal to the number of times that {@code true} + * occurs in the fields array. + * + * @param vertexFields The array of flags that describes which fields are to be included from the CSV file for vertices. + * @return The CSV reader instance itself, to allow for fluent function chaining. + */ + public GraphCsvReader includeVertexFields(boolean ... vertexFields) { + this.VertexReader.includeFields(vertexFields); + return this; + } + + /** + * Configures which fields of the CSV file containing edges data should be included and which should be skipped. The + * parser will look at the first {@code n} fields, where {@code n} is the length of the boolean + * array. The parser will skip over all fields where the boolean value at the corresponding position + * in the array is {@code false}. The result contains the fields where the corresponding position in + * the boolean array is {@code true}. + * The number of fields in the result is consequently equal to the number of times that {@code true} + * occurs in the fields array. + * + * @param edgeFields The array of flags that describes which fields are to be included from the CSV file for edges. + * @return The CSV reader instance itself, to allow for fluent function chaining. + */ + + public GraphCsvReader includeEdgeFields(boolean ... edgeFields) { + this.EdgeReader.includeFields(edgeFields); + return this; + } + + /** + * Configures which fields of the CSV file containing vertices data should be included and which should be skipped. The + * positions in the string (read from position 0 to its length) define whether the field at + * the corresponding position in the CSV schema should be included. + * parser will look at the first {@code n} fields, where {@code n} is the length of the mask string + * The parser will skip over all fields where the character at the corresponding position + * in the string is {@code '0'}, {@code 'F'}, or {@code 'f'} (representing the value + * {@code false}). The result contains the fields where the corresponding position in + * the boolean array is {@code '1'}, {@code 'T'}, or {@code 't'} (representing the value {@code true}). + * + * @param mask The string mask defining which fields to include and which to skip. + * @return The Graph Csv reader instance itself, to allow for fluent function chaining. + */ + + + public GraphCsvReader includeVertexFields(String mask) { + this.VertexReader.includeFields(mask); + return this; + } + + /** + * Configures which fields of the CSV file containing edges data should be included and which should be skipped. The + * positions in the string (read from position 0 to its length) define whether the field at + * the corresponding position in the CSV schema should be included. + * parser will look at the first {@code n} fields, where {@code n} is the length of the mask string + * The parser will skip over all fields where the character at the corresponding position + * in the string is {@code '0'}, {@code 'F'}, or {@code 'f'} (representing the value + * {@code false}). The result contains the fields where the corresponding position in + * the boolean array is {@code '1'}, {@code 'T'}, or {@code 't'} (representing the value {@code true}). + * + * @param mask The string mask defining which fields to include and which to skip. + * @return The Graph Csv reader instance itself, to allow for fluent function chaining. + */ + + + public GraphCsvReader includeEdgeFields(String mask) { + this.VertexReader.includeFields(mask); + return this; + } + + /** + * Configures which fields of the CSV file containing vertices data should be included and which should be skipped. The + * bits in the value (read from least significant to most significant) define whether the field at + * the corresponding position in the CSV schema should be included. + * parser will look at the first {@code n} fields, where {@code n} is the position of the most significant + * non-zero bit. + * The parser will skip over all fields where the character at the corresponding bit is zero, and + * include the fields where the corresponding bit is one. + * <p> + * Examples: + * <ul> + * <li>A mask of {@code 0x7} would include the first three fields.</li> + * <li>A mask of {@code 0x26} (binary {@code 100110} would skip the first fields, include fields + * two and three, skip fields four and five, and include field six.</li> + * </ul> + * + * @param mask The bit mask defining which fields to include and which to skip. + * @return The Graph CSV reader instance itself, to allow for fluent function chaining. + */ + + + public GraphCsvReader includeVertexFields(long mask) { + this.VertexReader.includeFields(mask); + return this; + } + + /** + * Configures which fields of the CSV file containing edges data should be included and which should be skipped. The + * bits in the value (read from least significant to most significant) define whether the field at + * the corresponding position in the CSV schema should be included. + * parser will look at the first {@code n} fields, where {@code n} is the position of the most significant + * non-zero bit. + * The parser will skip over all fields where the character at the corresponding bit is zero, and + * include the fields where the corresponding bit is one. + * <p> + * Examples: + * <ul> + * <li>A mask of {@code 0x7} would include the first three fields.</li> + * <li>A mask of {@code 0x26} (binary {@code 100110} would skip the first fields, include fields + * two and three, skip fields four and five, and include field six.</li> + * </ul> + * + * @param mask The bit mask defining which fields to include and which to skip. + * @return The Graph CSV reader instance itself, to allow for fluent function chaining. + */ + + + public GraphCsvReader includeEdgeFields(long mask) { + this.VertexReader.includeFields(mask); + return this; + } + + + + /** + * Sets the CSV readers for the Edges and Vertices files to ignore the first line. This is useful for files that contain a header line. + * + * @return The Graph CSV reader instance itself, to allow for fluent function chaining. + */ + public GraphCsvReader ignoreFirstLine() { + this.EdgeReader.ignoreFirstLine(); + this.VertexReader.ignoreFirstLine(); + return this; + } + + /** + * Sets the CSV readers for the Edges and Vertices files to ignore any invalid lines. + * This is useful for files that contain an empty line at the end, multiple header lines or comments. This would throw an exception otherwise. + * + * @return The CSV reader instance itself, to allow for fluent function chaining. + */ + public GraphCsvReader ignoreInvalidLines(){ + this.EdgeReader.ignoreInvalidLines(); + this.VertexReader.ignoreInvalidLines(); --- End diff -- and this should be the last one ;)
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