[ 
https://issues.apache.org/jira/browse/FLINK-24068?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Yun Gao updated FLINK-24068:
----------------------------
    Description: 
{code:java}
04:51:11,727 [Flat Map -> Sink: Unnamed (10/12)#1] WARN 
org.apache.flink.runtime.taskmanager.Task [] - Flat Map -> Sink: Unnamed 
(10/12)#1 (0d965fd3c0de11dc7fb6793435cda8ba) switched from RUNNING to FAILED 
with failure cause: java.lang.IllegalStateException: Alignment time is less 
than zero({}). Is the time monotonic? [-9223369873401849363]
 at org.apache.flink.util.Preconditions.checkState(Preconditions.java:215)
 at 
org.apache.flink.streaming.runtime.io.checkpointing.CheckpointBarrierHandler.markAlignmentEnd(CheckpointBarrierHandler.java:181)
 at 
org.apache.flink.streaming.runtime.io.checkpointing.CheckpointBarrierHandler.markAlignmentEnd(CheckpointBarrierHandler.java:177)
 at 
org.apache.flink.streaming.runtime.io.checkpointing.SingleCheckpointBarrierHandler.checkCheckpointAlignedAndTransformState(SingleCheckpointBarrierHandler.java:253)
 at 
org.apache.flink.streaming.runtime.io.checkpointing.SingleCheckpointBarrierHandler.processBarrier(SingleCheckpointBarrierHandler.java:240)
 at 
org.apache.flink.streaming.runtime.io.checkpointing.CheckpointedInputGate.handleEvent(CheckpointedInputGate.java:181)
 at 
org.apache.flink.streaming.runtime.io.checkpointing.CheckpointedInputGate.pollNext(CheckpointedInputGate.java:159)
 at 
org.apache.flink.streaming.runtime.io.AbstractStreamTaskNetworkInput.emitNext(AbstractStreamTaskNetworkInput.java:110)
 at 
org.apache.flink.streaming.runtime.io.StreamOneInputProcessor.processInput(StreamOneInputProcessor.java:65)
 at 
org.apache.flink.streaming.runtime.tasks.StreamTask.processInput(StreamTask.java:490)
{code}
This is caused by:
 # SingleCheckpointBarrierHandler first receive a BarrierAnnouncement, which 
would call checkNewCheckpoint to reset the currentCheckpointId and the 
alignedChannels.
 # SingleCheckpointBarrierHandler then received an EndOfPartition, which would 
add the channel to the alignedChannels.
 # SingleCheckpointBarrierHandler then received a barrier, which would found 
that the alignedChannels is already not empty, then it would skip the 
markAlignmentStart.

We might change 3 to judge if this is the first barrier to receive.

  was:
{code:java}
04:51:11,727 [Flat Map -> Sink: Unnamed (10/12)#1] WARN 
org.apache.flink.runtime.taskmanager.Task [] - Flat Map -> Sink: Unnamed 
(10/12)#1 (0d965fd3c0de11dc7fb6793435cda8ba) switched from RUNNING to FAILED 
with failure cause: java.lang.IllegalStateException: Alignment time is less 
than zero({}). Is the time monotonic? [-9223369873401849363]
 at org.apache.flink.util.Preconditions.checkState(Preconditions.java:215)
 at 
org.apache.flink.streaming.runtime.io.checkpointing.CheckpointBarrierHandler.markAlignmentEnd(CheckpointBarrierHandler.java:181)
 at 
org.apache.flink.streaming.runtime.io.checkpointing.CheckpointBarrierHandler.markAlignmentEnd(CheckpointBarrierHandler.java:177)
 at 
org.apache.flink.streaming.runtime.io.checkpointing.SingleCheckpointBarrierHandler.checkCheckpointAlignedAndTransformState(SingleCheckpointBarrierHandler.java:253)
 at 
org.apache.flink.streaming.runtime.io.checkpointing.SingleCheckpointBarrierHandler.processBarrier(SingleCheckpointBarrierHandler.java:240)
 at 
org.apache.flink.streaming.runtime.io.checkpointing.CheckpointedInputGate.handleEvent(CheckpointedInputGate.java:181)
 at 
org.apache.flink.streaming.runtime.io.checkpointing.CheckpointedInputGate.pollNext(CheckpointedInputGate.java:159)
 at 
org.apache.flink.streaming.runtime.io.AbstractStreamTaskNetworkInput.emitNext(AbstractStreamTaskNetworkInput.java:110)
 at 
org.apache.flink.streaming.runtime.io.StreamOneInputProcessor.processInput(StreamOneInputProcessor.java:65)
 at 
org.apache.flink.streaming.runtime.tasks.StreamTask.processInput(StreamTask.java:490)
{code}

This is caused due to:
# SingleCheckpointBarrierHandler first receive a BarrierAnnouncement, which 
would call checkNewCheckpoint to reset the currentCheckpointId and the 
alignedChannels.
# SingleCheckpointBarrierHandler then received an EndOfPartition, which would 
add the channel to the alignedChannels.
# SingleCheckpointBarrierHandler then received a barrier, which would found 
that the alignedChannels is already not empty, then it would skip the 
markAlignmentStart. 

We might change 3 to judge if this is the first barrier to receive.


> CheckpointBarrierHandler may skip the markAlignmentStart for alignment 
> -with-timeout checkpoint
> -----------------------------------------------------------------------------------------------
>
>                 Key: FLINK-24068
>                 URL: https://issues.apache.org/jira/browse/FLINK-24068
>             Project: Flink
>          Issue Type: Sub-task
>          Components: Runtime / Checkpointing
>    Affects Versions: 1.14.0
>            Reporter: Yun Gao
>            Priority: Major
>
> {code:java}
> 04:51:11,727 [Flat Map -> Sink: Unnamed (10/12)#1] WARN 
> org.apache.flink.runtime.taskmanager.Task [] - Flat Map -> Sink: Unnamed 
> (10/12)#1 (0d965fd3c0de11dc7fb6793435cda8ba) switched from RUNNING to FAILED 
> with failure cause: java.lang.IllegalStateException: Alignment time is less 
> than zero({}). Is the time monotonic? [-9223369873401849363]
>  at org.apache.flink.util.Preconditions.checkState(Preconditions.java:215)
>  at 
> org.apache.flink.streaming.runtime.io.checkpointing.CheckpointBarrierHandler.markAlignmentEnd(CheckpointBarrierHandler.java:181)
>  at 
> org.apache.flink.streaming.runtime.io.checkpointing.CheckpointBarrierHandler.markAlignmentEnd(CheckpointBarrierHandler.java:177)
>  at 
> org.apache.flink.streaming.runtime.io.checkpointing.SingleCheckpointBarrierHandler.checkCheckpointAlignedAndTransformState(SingleCheckpointBarrierHandler.java:253)
>  at 
> org.apache.flink.streaming.runtime.io.checkpointing.SingleCheckpointBarrierHandler.processBarrier(SingleCheckpointBarrierHandler.java:240)
>  at 
> org.apache.flink.streaming.runtime.io.checkpointing.CheckpointedInputGate.handleEvent(CheckpointedInputGate.java:181)
>  at 
> org.apache.flink.streaming.runtime.io.checkpointing.CheckpointedInputGate.pollNext(CheckpointedInputGate.java:159)
>  at 
> org.apache.flink.streaming.runtime.io.AbstractStreamTaskNetworkInput.emitNext(AbstractStreamTaskNetworkInput.java:110)
>  at 
> org.apache.flink.streaming.runtime.io.StreamOneInputProcessor.processInput(StreamOneInputProcessor.java:65)
>  at 
> org.apache.flink.streaming.runtime.tasks.StreamTask.processInput(StreamTask.java:490)
> {code}
> This is caused by:
>  # SingleCheckpointBarrierHandler first receive a BarrierAnnouncement, which 
> would call checkNewCheckpoint to reset the currentCheckpointId and the 
> alignedChannels.
>  # SingleCheckpointBarrierHandler then received an EndOfPartition, which 
> would add the channel to the alignedChannels.
>  # SingleCheckpointBarrierHandler then received a barrier, which would found 
> that the alignedChannels is already not empty, then it would skip the 
> markAlignmentStart.
> We might change 3 to judge if this is the first barrier to receive.



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