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https://issues.apache.org/jira/browse/HBASE-2866?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=12891483#action_12891483
 ] 

stack commented on HBASE-2866:
------------------------------

@Kannan Thanks.  Looking at master and at code, my thought is that the fixup 
code didn't run because that region is stuck in transition.   Here is where 
we'd skip out starting at about #562 in BaseScanner:

{code}
    synchronized (this.master.getRegionManager()) {
      /* We don't assign regions that are offline, in transition or were on
       * a dead server. Regions that were on a dead server will get reassigned
       * by ProcessServerShutdown
       */
      if (info.isOffline() ||
        
this.master.getRegionManager().regionIsInTransition(info.getRegionNameAsString())
 ||
         // St.Ack ^^^^^^^^^^ My guess is we are in here^^^^^^^^^
          (serverName != null && 
this.master.getServerManager().isDead(serverName))) {
        return;
      }
{code}

I think 'status' in shell:

{code}
hbase(main):003:0> status 'detailed'
version 0.89.0-SNAPSHOT
0 regionsInTransition
1 live servers
    192.168.1.157:49248 1279864501042
        requests=0, regions=3, usedHeap=32, maxHeap=994
        .META.,,1
            stores=2, storefiles=0, storefileSizeMB=0, memstoreSizeMB=0, 
storefileIndexSizeMB=0
        x,,1279864569260.65c4857477eb31bff0fafae4797a90d8.
            stores=1, storefiles=0, storefileSizeMB=0, memstoreSizeMB=0, 
storefileIndexSizeMB=0
        -ROOT-,,0
            stores=1, storefiles=1, storefileSizeMB=0, memstoreSizeMB=0, 
storefileIndexSizeMB=0
0 dead servers
{code}

@Karthik Give me a clue as to what you are thinking and I'll have a go at 
fixing this one if you don't have the time boss.

> Region permanently offlined 
> ----------------------------
>
>                 Key: HBASE-2866
>                 URL: https://issues.apache.org/jira/browse/HBASE-2866
>             Project: HBase
>          Issue Type: Bug
>            Reporter: Kannan Muthukkaruppan
>            Assignee: Karthik Ranganathan
>            Priority: Blocker
>         Attachments: master.log
>
>
> After split, master attempts to reassign a region to a region server. 
> Occasionally, such a region can get permanently offlined.
> Master:
> ---------
> {code}
> 2010-07-22 01:26:00,914 INFO org.apache.hadoop.hbase.master.ServerManager: 
> Processing MSG_REPORT_SPLIT_INCLUDES_DAUGHTERS: 
> test1,6512200000,1279784117114.6466481aa931f8c1fa87622735487a72.: Daughters; 
> test1,6512200000,1279787158624.6ead25ae677116cc88fc5420bb39d52e., 
> test1,6531790000,1279787\
> 158624.8d5490bfc166c687657cb09203bd7d44. from 
> test024.test.xyz.com,60020,1279780567744; 1 of 1                              
>                                                                               
>                                                                               
>            
> 2010-07-22 01:26:00,935 DEBUG 
> org.apache.hadoop.hbase.zookeeper.ZooKeeperWrapper: Creating UNASSIGNED 
> region 8d5490bfc166c687657cb09203bd7d44 in state = M2ZK_REGION_OFFLINE
> 2010-07-22 01:26:00,935 DEBUG 
> org.apache.hadoop.hbase.zookeeper.ZooKeeperWrapper: Creating UNASSIGNED 
> region 8d5490bfc166c687657cb09203bd7d44 in state = M2ZK_REGION_OFFLINE
> 2010-07-22 01:26:00,945 INFO org.apache.hadoop.hbase.master.RegionManager: 
> Assigning region 
> test1,6531790000,1279787158624.8d5490bfc166c687657cb09203bd7d44. to 
> test024.test.xyz.com,60020,1279780567744
> 2010-07-22 01:26:00,949 DEBUG 
> org.apache.hadoop.hbase.zookeeper.ZooKeeperWrapper: While updating UNASSIGNED 
> region 8d5490bfc166c687657cb09203bd7d44 exists, state = M2ZK_REGION_OFFLINE
> 2010-07-22 01:26:00,954 DEBUG org.apache.hadoop.hbase.master.RegionManager: 
> Created UNASSIGNED zNode 
> test1,6531790000,1279787158624.8d5490bfc166c687657cb09203bd7d44. in state 
> M2ZK_REGION_OFFLINE
> {code}
> -------------------
> Region Server:
> {code}
> 2010-07-22 01:26:00,947 INFO 
> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN: 
> test1,6531790000,1279787158624.8d5490bfc166c687657cb09203bd7d44.
> 2010-07-22 01:26:00,947 INFO 
> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN: 
> test1,6512200000,1279787158624.6ead25ae677116cc88fc5420bb39d52e.
> 2010-07-22 01:26:00,947 INFO 
> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker: MSG_REGION_OPEN: 
> test1,6531790000,1279787158624.8d5490bfc166c687657cb09203bd7d44.
> 2010-07-22 01:26:00,948 DEBUG 
> org.apache.hadoop.hbase.regionserver.RSZookeeperUpdater: Updating ZNode 
> /hbase/UNASSIGNED/8d5490bfc166c687657cb09203bd7d44 with 
> [RS2ZK_REGION_OPENING] expected version = 0
> 2010-07-22 01:26:00,952 INFO 
> org.apache.hadoop.hbase.regionserver.HRegionServer: Got ZooKeeper event, 
> state: SyncConnected, type: NodeDataChanged, path: 
> /hbase/UNASSIGNED/8d5490bfc166c687657cb09203bd7d44
> 2010-07-22 01:26:00,974 WARN 
> org.apache.hadoop.hbase.zookeeper.ZooKeeperWrapper: 
> <msgstorectrl001.test.xyz.com,msgstorectrl021.test.xyz.com,msgstorectrl041.test.xyz.com,msgstorectrl061.test.xyz.com,msgstorectrl081.ash2.facebook\
> .com:/hbase,test024.test.xyz.com,60020,1279780567744>Failed to write data to 
> ZooKeeper
> org.apache.zookeeper.KeeperException$BadVersionException: KeeperErrorCode = 
> BadVersion for /hbase/UNASSIGNED/8d5490bfc166c687657cb09203bd7d44
>         at 
> org.apache.zookeeper.KeeperException.create(KeeperException.java:106)
>         at 
> org.apache.zookeeper.KeeperException.create(KeeperException.java:42)
>         at org.apache.zookeeper.ZooKeeper.setData(ZooKeeper.java:1038)
>         at 
> org.apache.hadoop.hbase.zookeeper.ZooKeeperWrapper.writeZNode(ZooKeeperWrapper.java:1062)
>         at 
> org.apache.hadoop.hbase.regionserver.RSZookeeperUpdater.updateZKWithEventData(RSZookeeperUpdater.java:161)
>         at 
> org.apache.hadoop.hbase.regionserver.RSZookeeperUpdater.startRegionOpenEvent(RSZookeeperUpdater.java:115)
>         at 
> org.apache.hadoop.hbase.regionserver.HRegionServer.openRegion(HRegionServer.java:1428)
>         at 
> org.apache.hadoop.hbase.regionserver.HRegionServer$Worker.run(HRegionServer.java:1337)
>         at java.lang.Thread.run(Thread.java:619)
> 2010-07-22 01:26:00,975 ERROR 
> org.apache.hadoop.hbase.regionserver.HRegionServer: Error opening 
> test1,6531790000,1279787158624.8d5490bfc166c687657cb09203bd7d44.
> java.io.IOException: 
> org.apache.zookeeper.KeeperException$BadVersionException: KeeperErrorCode = 
> BadVersion for /hbase/UNASSIGNED/8d5490bfc166c687657cb09203bd7d44
>         at 
> org.apache.hadoop.hbase.zookeeper.ZooKeeperWrapper.writeZNode(ZooKeeperWrapper.java:1072)
> {code}
> Meta:
> -----
> Relevant section of META.
> Note that these are the only two entries for the problem region. The first 
> one is the parent region (and this problem
> region is its splitB).  For the next one, note that there is no "info:server" 
> and "info:serverstartcode" columns.
> {code}
>  test1,6512200000,12797841 column=info:splitB, timestamp=1279787160693, 
> value=\x00\x0A6551820000\x00
>  17114.6466481aa931f8c1fa8 
> \x00\x00\x01)\xf9...@test1,6531790000,1279787158624.8d5490bfc166c687657cb
>  7622735487a72.            
> 09203bd7d44.\x00\x0A6531790000\x00\x00\x00\x05\x05test1\x00\x00\x00\x00\x
>                            
> 00\x02\x00\x00\x00\x07IS_ROOT\x00\x00\x00\x05false\x00\x00\x00\x07IS_META
>                            
> \x00\x00\x00\x05false\x00\x00\x00\x01\x08\x07actions\x00\x00\x00\x08\x00\
>                            
> x00\x00\x0BBLOOMFILTER\x00\x00\x00\x04NONE\x00\x00\x00\x11REPLICATION_SCO
>                            
> PE\x00\x00\x00\x010\x00\x00\x00\x0BCOMPRESSION\x00\x00\x00\x04NONE\x00\x0
>                            
> 0\x00\x08VERSIONS\x00\x00\x00\x013\x00\x00\x00\x03TTL\x00\x00\x00\x0A2147
>                            
> 483647\x00\x00\x00\x09BLOCKSIZE\x00\x00\x00\x0565536\x00\x00\x00\x09IN_ME
>                            
> MORY\x00\x00\x00\x05false\x00\x00\x00\x0ABLOCKCACHE\x00\x00\x00\x04true\x
>                            FE\xA0\xFD\xC5
>  ..
>  test1,6531790000,12797871 column=info:regioninfo, timestamp=1279787160782, 
> value=REGION => {NAME =>
>  58624.8d5490bfc166c687657  
> 'test1,6531790000,1279787158624.8d5490bfc166c687657cb09203bd7d44.', STAR
>  cb09203bd7d44.            TKEY => '6531790000', ENDKEY => '6551820000', 
> ENCODED => 8d5490bfc166c687
>                            657cb09203bd7d44, TABLE => {{NAME => 'test1', 
> FAMILIES => [{NAME => 'acti
>                            ons', BLOOMFILTER => 'NONE', REPLICATION_SCOPE => 
> '0', VERSIONS => '3', C
>                            OMPRESSION => 'NONE', TTL => '2147483647', 
> BLOCKSIZE => '65536', IN_MEMOR
>                            Y => 'false', BLOCKCACHE => 'true'}]}}
> {code}
> I think Karthik has a handle on the first part (i.e. why the RS ran into the 
> version mismatch, and aborted opening the region). He'll add details to the 
> JIRA. But what we aren't clear about at this stage is why the base scanner 
> didn't kick in and try to reassign the region.
> BTW, HBase "hbck" reported this as well (which was good!):
> {code}
> Number of Tables: 5
> Number of live region servers:92
> Number of dead region servers:0
> .........
> ERROR: Region 
> test1,6512200000,1279784117114.6466481aa931f8c1fa87622735487a72. is not 
> served by any region server  but is listed in META to be on server null
> ERROR: Region 
> test1,6531790000,1279787158624.8d5490bfc166c687657cb09203bd7d44. is not 
> served by any region server  but is listed in META to be on server null
> {code}

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