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https://issues.apache.org/jira/browse/HBASE-5458?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13556739#comment-13556739
]
Hadoop QA commented on HBASE-5458:
----------------------------------
{color:red}-1 overall{color}. Here are the results of testing the latest
attachment
http://issues.apache.org/jira/secure/attachment/12565392/HBASE-5458-trunk-2.patch
against trunk revision .
{color:green}+1 @author{color}. The patch does not contain any @author
tags.
{color:red}-1 tests included{color}. The patch doesn't appear to include
any new or modified tests.
Please justify why no new tests are needed for this
patch.
Also please list what manual steps were performed to
verify this patch.
{color:green}+1 hadoop2.0{color}. The patch compiles against the hadoop
2.0 profile.
{color:green}+1 javadoc{color}. The javadoc tool did not generate any
warning messages.
{color:green}+1 javac{color}. The applied patch does not increase the
total number of javac compiler warnings.
{color:green}+1 findbugs{color}. The patch does not introduce any new
Findbugs (version 1.3.9) warnings.
{color:green}+1 release audit{color}. The applied patch does not increase
the total number of release audit warnings.
{color:green}+1 lineLengths{color}. The patch does not introduce lines
longer than 100
{color:red}-1 core tests{color}. The patch failed these unit tests:
org.apache.hadoop.hbase.regionserver.TestScanWithBloomError
org.apache.hadoop.hbase.io.hfile.TestHFile
org.apache.hadoop.hbase.io.hfile.TestHFileBlockCompatibility
org.apache.hadoop.hbase.io.hfile.TestChecksum
org.apache.hadoop.hbase.io.hfile.TestHFileWriterV2
Test results:
https://builds.apache.org/job/PreCommit-HBASE-Build/4077//testReport/
Findbugs warnings:
https://builds.apache.org/job/PreCommit-HBASE-Build/4077//artifact/trunk/patchprocess/newPatchFindbugsWarningshbase-protocol.html
Findbugs warnings:
https://builds.apache.org/job/PreCommit-HBASE-Build/4077//artifact/trunk/patchprocess/newPatchFindbugsWarningshbase-hadoop2-compat.html
Findbugs warnings:
https://builds.apache.org/job/PreCommit-HBASE-Build/4077//artifact/trunk/patchprocess/newPatchFindbugsWarningshbase-examples.html
Findbugs warnings:
https://builds.apache.org/job/PreCommit-HBASE-Build/4077//artifact/trunk/patchprocess/newPatchFindbugsWarningshbase-hadoop1-compat.html
Findbugs warnings:
https://builds.apache.org/job/PreCommit-HBASE-Build/4077//artifact/trunk/patchprocess/newPatchFindbugsWarningshbase-common.html
Findbugs warnings:
https://builds.apache.org/job/PreCommit-HBASE-Build/4077//artifact/trunk/patchprocess/newPatchFindbugsWarningshbase-server.html
Findbugs warnings:
https://builds.apache.org/job/PreCommit-HBASE-Build/4077//artifact/trunk/patchprocess/newPatchFindbugsWarningshbase-hadoop-compat.html
Console output:
https://builds.apache.org/job/PreCommit-HBASE-Build/4077//console
This message is automatically generated.
> Thread safety issues with Compression.Algorithm.GZ and CompressionTest
> ----------------------------------------------------------------------
>
> Key: HBASE-5458
> URL: https://issues.apache.org/jira/browse/HBASE-5458
> Project: HBase
> Issue Type: Bug
> Components: io
> Affects Versions: 0.90.5, 0.92.2, 0.96.0, 0.94.4
> Reporter: David McIntosh
> Assignee: Elliott Clark
> Priority: Minor
> Attachments: HBASE-5458-090-0.patch, HBASE-5458-090-1.patch,
> HBASE-5458-090-2.patch, HBASE-5458-092-2.patch, HBASE-5458-094-2.patch,
> HBASE-5458-trunk-2.patch
>
>
> I've seen some occasional NullPointerExceptions in
> ZlibFactory.isNativeZlibLoaded(conf) during region server startups and the
> completebulkload process. This is being caused by a null configuration
> getting passed to the isNativeZlibLoaded method. I think this happens when 2
> or more threads call the CompressionTest.testCompression method at once. If
> the GZ algorithm has not been tested yet both threads could continue on and
> attempt to load the compressor. For GZ the getCodec method is not thread
> safe which could lead to one thread getting a reference to a GzipCodec that
> has a null configuration.
> {code}
> current:
> DefaultCodec getCodec(Configuration conf) {
> if (codec == null) {
> codec = new GzipCodec();
> codec.setConf(new Configuration(conf));
> }
> return codec;
> }
> {code}
> one possible fix would be something like this:
> {code}
> DefaultCodec getCodec(Configuration conf) {
> if (codec == null) {
> GzipCodec gzip = new GzipCodec();
> gzip.setConf(new Configuration(conf));
> codec = gzip;
> }
> return codec;
> }
> {code}
> But that may not be totally safe without some synchronization. An upstream
> fix in CompressionTest could also prevent multi thread access to
> GZ.getCodec(conf)
> exceptions:
> 12/02/21 16:11:56 ERROR handler.OpenRegionHandler: Failed open of
> region=all-monthly,,1326263896983.bf574519a95263ec23a2bad9f5b8cbf4.
> java.io.IOException: java.lang.NullPointerException
> at
> org.apache.hadoop.hbase.util.CompressionTest.testCompression(CompressionTest.java:89)
> at
> org.apache.hadoop.hbase.regionserver.HRegion.checkCompressionCodecs(HRegion.java:2670)
> at
> org.apache.hadoop.hbase.regionserver.HRegion.openHRegion(HRegion.java:2659)
> at
> org.apache.hadoop.hbase.regionserver.HRegion.openHRegion(HRegion.java:2647)
> at
> org.apache.hadoop.hbase.regionserver.handler.OpenRegionHandler.openRegion(OpenRegionHandler.java:312)
> at
> org.apache.hadoop.hbase.regionserver.handler.OpenRegionHandler.process(OpenRegionHandler.java:99)
> at
> org.apache.hadoop.hbase.executor.EventHandler.run(EventHandler.java:158)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
> at java.lang.Thread.run(Thread.java:662)
> Caused by: java.lang.NullPointerException
> at
> org.apache.hadoop.io.compress.zlib.ZlibFactory.isNativeZlibLoaded(ZlibFactory.java:63)
> at
> org.apache.hadoop.io.compress.GzipCodec.getCompressorType(GzipCodec.java:166)
> at
> org.apache.hadoop.io.compress.CodecPool.getCompressor(CodecPool.java:100)
> at
> org.apache.hadoop.io.compress.CodecPool.getCompressor(CodecPool.java:112)
> at
> org.apache.hadoop.hbase.io.hfile.Compression$Algorithm.getCompressor(Compression.java:236)
> at
> org.apache.hadoop.hbase.util.CompressionTest.testCompression(CompressionTest.java:84)
> ... 9 more
> Caused by: java.io.IOException: java.lang.NullPointerException
> at
> org.apache.hadoop.hbase.util.CompressionTest.testCompression(CompressionTest.java:89)
> at
> org.apache.hadoop.hbase.io.hfile.HFile$Reader.readTrailer(HFile.java:890)
> at
> org.apache.hadoop.hbase.io.hfile.HFile$Reader.loadFileInfo(HFile.java:819)
> at
> org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.groupOrSplit(LoadIncrementalHFiles.java:405)
> at
> org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$2.call(LoadIncrementalHFiles.java:323)
> at
> org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$2.call(LoadIncrementalHFiles.java:321)
> at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
> at java.util.concurrent.FutureTask.run(FutureTask.java:138)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
> at java.lang.Thread.run(Thread.java:662)
> Caused by: java.lang.NullPointerException
> at
> org.apache.hadoop.io.compress.zlib.ZlibFactory.isNativeZlibLoaded(ZlibFactory.java:63)
> at
> org.apache.hadoop.io.compress.GzipCodec.getCompressorType(GzipCodec.java:166)
> at
> org.apache.hadoop.io.compress.CodecPool.getCompressor(CodecPool.java:100)
> at
> org.apache.hadoop.io.compress.CodecPool.getCompressor(CodecPool.java:112)
> at
> org.apache.hadoop.hbase.io.hfile.Compression$Algorithm.getCompressor(Compression.java:236)
> at
> org.apache.hadoop.hbase.util.CompressionTest.testCompression(CompressionTest.java:84)
> ... 10 more
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