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https://jira.codehaus.org/browse/MASSEMBLY-619?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=345046#comment-345046
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Chris Seieroe commented on MASSEMBLY-619:
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I have an assembly descriptor with many dependency sets and I see the same 
problem with useTransitiveDependencies. We have it on most of the dependency 
sets, but not all of them. One in particular is actually including transitive 
dependencies even though I set that value to false. It seems to work correctly 
with version 2.2-beta-5 but when I tried to upgrade to 2.2, I noticed the 
problem. It also happens with versions 2.3 and 2.4.

> Configurations of different <dependencySet>s influence each other
> -----------------------------------------------------------------
>
>                 Key: MASSEMBLY-619
>                 URL: https://jira.codehaus.org/browse/MASSEMBLY-619
>             Project: Maven Assembly Plugin
>          Issue Type: Bug
>          Components: dependencySet
>    Affects Versions: 2.2.2, 2.3
>         Environment: Mqven 3.0.4, JDK 1.7
>            Reporter: Olaf Otto
>            Priority: Minor
>
> When configuring two <dependencySet> elements, the configurations in the 
> second influence the first one. 
> h2. Reproduction:
> The following configuration utilizes to sets to copy different elements of 
> the dependency hierarchy of a module into two distinct subfolders:
> {code:xml}
> <dependencySet>
>       <outputDirectory>software</outputDirectory>
>       <useProjectArtifact>false</useProjectArtifact>
>       <excludes>
>               <exclude>org.codehaus.groovy:*</exclude>
>       </excludes>
>       <useTransitiveDependencies>false</useTransitiveDependencies>
> </dependencySet>
> <dependencySet>
>       <outputDirectory>libs</outputDirectory>
>       <useProjectArtifact>false</useProjectArtifact>
>       <includes>
>               <include>org.codehaus.groovy:groovy-all</include>
>       </includes>
> </dependencySet>
> {code}
> However, the first <dependencySet> unexpectedly contains most of the 
> transitive dependencies. The issue can only be resolved by adding 
> <useTransitiveDependencies>false</useTransitiveDependencies> to the second 
> <dependencySet>, too. The issue remains reproducible when changing <scope> 
> <outputMapping> etc. I suppose the isolation of the set configuration is 
> broken. I could reproduce the issue with both 2.3 and 2.2.2.



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