Data-drone opened a new issue #20542:
URL: https://github.com/apache/incubator-mxnet/issues/20542
## Description
I am trying to build mxnet source with the version:
`git checkout tags/1.9.0.rc6 -b 1.9.x`
I am getting `No Such file or directory` errors when I set it to use
`openblas` rather than `mkl` this system has both openblas and mkl installed.
This happens at the `mshadow` compile. this error goes away. Is there some
error with the way that mshadow cmake is set so that it isn't compiling against
openblas instead?
### Error Message
When compiling I am using the command:
```
mkdir /opt/mxnet/cmake_binary && \
cd /opt/mxnet/cmake_binary \
&& cmake -DCMAKE_BUILD_TYPE=Release \
-DCMAKE_INSTALL_PREFIX=$(python -c "import sys; print(sys.prefix)") \
-DCMAKE_FIND_ROOT_PATH=${CONDA_PREFIX} \
-DCMAKE_FIND_ROOT_PATH_MODE_LIBRARY=BOTH \
-DUSE_OPENCV=ON \
-DUSE_MKLDNN=ON \
-DUSE_LAPACK=ON \
-DUSE_ONEDNN=ON \
-DUSE_MKL_IF_AVAILABLE=OFF \
-DUSE_BLAS=mkl \
-DUSE_INTEL_PATH=${CONDA_PREFIX}/lib \
-DUSE_CUDA=ON \
-DUSE_CUDNN=ON \
-DUSE_OPENMP=ON \
-DUSE_TVM_OP=OFF \
-DMXNET_CUDA_ARCH="7.5" \
-DUSE_NCCL=ON \
-DUSE_SSE=ON \
.. \
&& cmake --build . --parallel 28
```
When I set `-DUSE_BLAS=openblas` then I get an error with:
```
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:398:
CMakeFiles/mxnet_static.dir/src/engine/threaded_engine_pooled.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/base.h:33,
from /opt/mxnet/src/base.cc:25:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:132:
CMakeFiles/mxnet_static.dir/src/base.cc.o] Error 1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/resource.h:29,
from /opt/mxnet/src/executor/attach_op_resource_pass.cc:26:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:426:
CMakeFiles/mxnet_static.dir/src/executor/attach_op_resource_pass.cc.o] Error 1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/base.h:33,
from /opt/mxnet/src/c_api/c_api_ndarray.cc:26:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:202:
CMakeFiles/mxnet_static.dir/src/c_api/c_api_ndarray.cc.o] Error 1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/base.h:33,
from /opt/mxnet/src/c_api/./c_api_common.h:33,
from /opt/mxnet/src/c_api/c_api_error.cc:26:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:160:
CMakeFiles/mxnet_static.dir/src/c_api/c_api_error.cc.o] Error 1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/base.h:33,
from /opt/mxnet/src/common/cuda_utils.cc:26:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/rtc.h:22,
from /opt/mxnet/src/common/rtc.cc:20:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/base.h:33,
from /opt/mxnet/src/c_api/./c_api_common.h:33,
from /opt/mxnet/src/c_api/c_api_test.cc:27:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/base.h:33,
from /opt/mxnet/src/c_api/c_api_symbolic.cc:25:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/base.h:33,
from /opt/mxnet/src/c_api/c_api_executor.cc:25:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
compilation terminated.
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/storage.h:29,
from /opt/mxnet/src/engine/./threaded_engine.h:33,
from /opt/mxnet/src/engine/threaded_engine.cc:32:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:272:
CMakeFiles/mxnet_static.dir/src/common/cuda_utils.cc.o] Error 1
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:300:
CMakeFiles/mxnet_static.dir/src/common/rtc.cc.o] Error 1
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:244:
CMakeFiles/mxnet_static.dir/src/c_api/c_api_test.cc.o] Error 1
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:174:
CMakeFiles/mxnet_static.dir/src/c_api/c_api_executor.cc.o] Error 1
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:230:
CMakeFiles/mxnet_static.dir/src/c_api/c_api_symbolic.cc.o] Error 1
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:370:
CMakeFiles/mxnet_static.dir/src/engine/threaded_engine.cc.o] Error 1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/engine.h:34,
from /opt/mxnet/src/engine/engine.cc:25:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/base.h:33,
from /opt/mxnet/src/c_api/c_api.cc:39:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/executor.h:35,
from /opt/mxnet/src/c_api/c_predict_api.cc:28:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/engine.h:34,
from /opt/mxnet/src/common/./utils.h:32,
from /opt/mxnet/src/common/utils.cc:25:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/ndarray.h:43,
from /opt/mxnet/include/mxnet/runtime/packed_func.h:37,
from /opt/mxnet/src/api/operator/utils.h:29,
from /opt/mxnet/src/api/operator/utils.cc:24:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/base.h:33,
from /opt/mxnet/src/executor/graph_executor.cc:25:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/base.h:33,
from /opt/mxnet/src/executor/attach_op_execs_pass.cc:25:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:328:
CMakeFiles/mxnet_static.dir/src/engine/engine.cc.o] Error 1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/base.h:33,
from
/opt/mxnet/src/executor/eliminate_common_expr_pass.cc:27:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/base.h:33,
from /opt/mxnet/src/c_api/c_api_function.cc:26:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:146:
CMakeFiles/mxnet_static.dir/src/c_api/c_api.cc.o] Error 1
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:258:
CMakeFiles/mxnet_static.dir/src/c_api/c_predict_api.cc.o] Error 1
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:314:
CMakeFiles/mxnet_static.dir/src/common/utils.cc.o] Error 1
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:118:
CMakeFiles/mxnet_static.dir/src/api/operator/utils.cc.o] Error 1
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:454:
CMakeFiles/mxnet_static.dir/src/executor/graph_executor.cc.o] Error 1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/engine.h:34,
from /opt/mxnet/src/common/../common/utils.h:32,
from /opt/mxnet/src/common/exec_utils.h:33,
from /opt/mxnet/src/common/exec_utils.cc:25:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:412:
CMakeFiles/mxnet_static.dir/src/executor/attach_op_execs_pass.cc.o] Error 1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/engine.h:34,
from /opt/mxnet/src/engine/./engine_impl.h:28,
from /opt/mxnet/src/engine/naive_engine.cc:30:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:188:
CMakeFiles/mxnet_static.dir/src/c_api/c_api_function.cc.o] Error 1
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:440:
CMakeFiles/mxnet_static.dir/src/executor/eliminate_common_expr_pass.cc.o] Error
1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/storage.h:29,
from /opt/mxnet/src/engine/./threaded_engine.h:33,
from /opt/mxnet/src/engine/threaded_engine_perdevice.cc:32:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:286:
CMakeFiles/mxnet_static.dir/src/common/exec_utils.cc.o] Error 1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/ndarray.h:43,
from /opt/mxnet/include/mxnet/runtime/packed_func.h:37,
from /opt/mxnet/include/mxnet/runtime/registry.h:49,
from /opt/mxnet/include/mxnet/api_registry.h:31,
from /opt/mxnet/src/api/_api_internal/_api_internal.cc:25:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:342:
CMakeFiles/mxnet_static.dir/src/engine/naive_engine.cc.o] Error 1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/ndarray.h:43,
from /opt/mxnet/include/mxnet/runtime/packed_func.h:37,
from /opt/mxnet/src/api/operator/numpy/../utils.h:29,
from /opt/mxnet/src/api/operator/numpy/np_init_op.cc:24:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:384:
CMakeFiles/mxnet_static.dir/src/engine/threaded_engine_perdevice.cc.o] Error 1
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:76:
CMakeFiles/mxnet_static.dir/src/api/_api_internal/_api_internal.cc.o] Error 1
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:90:
CMakeFiles/mxnet_static.dir/src/api/operator/numpy/np_init_op.cc.o] Error 1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/ndarray.h:43,
from /opt/mxnet/include/mxnet/runtime/packed_func.h:37,
from /opt/mxnet/src/api/operator/numpy/../utils.h:29,
from
/opt/mxnet/src/api/operator/numpy/np_tensordot_op.cc:24:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:104:
CMakeFiles/mxnet_static.dir/src/api/operator/numpy/np_tensordot_op.cc.o] Error 1
In file included from /opt/mxnet/include/mshadow/tensor.h:35,
from /opt/mxnet/include/mxnet/./base.h:33,
from /opt/mxnet/include/mxnet/ndarray.h:43,
from
/opt/mxnet/include/mxnet/../../src/kvstore/gradient_compression.h:32,
from /opt/mxnet/include/mxnet/kvstore.h:34,
from /opt/mxnet/src/c_api/c_api_profile.cc:32:
/opt/mxnet/include/mshadow/./base.h:192:12: fatal error: mkl_blas.h: No such
file or directory
192 | #include <mkl_blas.h>
| ^~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/mxnet_static.dir/build.make:216:
CMakeFiles/mxnet_static.dir/src/c_api/c_api_profile.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:510: CMakeFiles/mxnet_static.dir/all]
Error 2
make: *** [Makefile:146: all] Error 2
```
## Environment
***We recommend using our script for collecting the diagnostic information
with the following command***
```
----------Python Info----------
Version : 3.8.10
Compiler : GCC 9.3.0
Build : ('default', 'May 11 2021 07:01:05')
Arch : ('64bit', 'ELF')
------------Pip Info-----------
Version : 21.2.4
Directory :
/opt/conda/envs/computer_vision/lib/python3.8/site-packages/pip
----------MXNet Info-----------
No MXNet installed.
----------System Info----------
Platform : Linux-5.4.0-80-generic-x86_64-with-glibc2.10
system : Linux
node : e4941ae20901
release : 5.4.0-80-generic
version : #90-Ubuntu SMP Fri Jul 9 22:49:44 UTC 2021
----------Hardware Info----------
machine : x86_64
processor : x86_64
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
Address sizes: 48 bits physical, 48 bits virtual
CPU(s): 32
On-line CPU(s) list: 0-31
Thread(s) per core: 2
Core(s) per socket: 16
Socket(s): 1
NUMA node(s): 1
Vendor ID: AuthenticAMD
CPU family: 25
Model: 33
Model name: AMD Ryzen 9 5950X 16-Core Processor
Stepping: 0
Frequency boost: enabled
CPU MHz: 2899.888
CPU max MHz: 3400.0000
CPU min MHz: 2200.0000
BogoMIPS: 6799.59
Virtualization: AMD-V
L1d cache: 512 KiB
L1i cache: 512 KiB
L2 cache: 8 MiB
L3 cache: 64 MiB
NUMA node0 CPU(s): 0-31
Vulnerability Itlb multihit: Not affected
Vulnerability L1tf: Not affected
Vulnerability Mds: Not affected
Vulnerability Meltdown: Not affected
Vulnerability Spec store bypass: Mitigation; Speculative Store Bypass
disabled via prctl and seccomp
Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and
__user pointer sanitization
Vulnerability Spectre v2: Mitigation; Full AMD retpoline, IBPB
conditional, IBRS_FW, STIBP always-on, RSB filling
Vulnerability Srbds: Not affected
Vulnerability Tsx async abort: Not affected
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep
mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext
fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl nonstop_tsc cpuid
extd_apicid aperfmperf
pni pclmulqdq monitor ssse3 fma cx16 sse4_1
sse4_2 movbe popcnt aes xsave avx f16c rdrand lahf_lm cmp_legacy svm extapic
cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw ibs skinit wdt tce topoext
perfctr_core p
erfctr_nb bpext perfctr_llc mwaitx cpb
cat_l3 cdp_l3 hw_pstate ssbd mba ibrs ibpb stibp vmmcall fsgsbase bmi1 avx2
smep bmi2 erms invpcid cqm rdt_a rdseed adx smap clflushopt clwb sha_ni
xsaveopt xsavec xgetbv1 xsa
ves cqm_llc cqm_occup_llc cqm_mbm_total
cqm_mbm_local clzero irperf xsaveerptr wbnoinvd arat npt lbrv svm_lock
nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter
pfthreshold avic v_vmsave_vmload v
gif umip pku ospke vaes vpclmulqdq rdpid
overflow_recov succor smca
```
</details>
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