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https://issues.apache.org/jira/browse/NIFI-2920?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15592346#comment-15592346
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Mark Payne commented on NIFI-2920:
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After looking into this some more, I believe that what I have replicated here 
is actually a different bug that affects only version 1.0. The symptoms are 
similar if not identical. However, the problem appears to not be the same, as I 
can easily reproduce the problem in version 1.0 but cannot reproduce the 
problem in the 0.x baseline. I tried in both 0.7.0 and 0.6.1. Given that you 
have reported this as a bug in 0.6.1, I think they are different. I have 
created a new ticket (NIFI-2925) to address the issue that affects 1.0 and will 
submit a PR for that problem momentarily. I can see in the code that problem in 
1.0 would not affect the 0.x branch. So I have marked the tickets as related 
but not the same.

> Swapped FlowFiles are not removed from content repo when a queue is emptied.
> ----------------------------------------------------------------------------
>
>                 Key: NIFI-2920
>                 URL: https://issues.apache.org/jira/browse/NIFI-2920
>             Project: Apache NiFi
>          Issue Type: Bug
>          Components: Core Framework
>    Affects Versions: 0.6.1
>         Environment: Linux
>            Reporter: Matthew Clarke
>            Priority: Critical
>
> If a queue contains enough FlowFiles to trigger swapping to occur and a user 
> selects "empty queue" or sets file expiration, only the content claims 
> associated to FlowFiles that were not swapped get removed from the content 
> repository.  All other content claims are left in the content repository and 
> are not moved to archive and/or purged.
> A restart of NiFi will produce app log messages about these unknown files 
> left in the content repo and will at that time move them to archive or purge 
> them.



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