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Sean Owen commented on SPARK-17572: ----------------------------------- This looks like an error from NFS, possibly permissions related. It does not look Spark-related. > Write.df is failing on spark cluster > ------------------------------------ > > Key: SPARK-17572 > URL: https://issues.apache.org/jira/browse/SPARK-17572 > Project: Spark > Issue Type: Bug > Components: SparkR > Affects Versions: 2.0.0 > Reporter: Sankar Mittapally > > Hi, > We have spark cluster with four nodes, all four nodes have NFS partition > shared(there is no HDFS), We have same uid on all servers. When we are trying > to write data we are getting following exceptions. I am not sure whether it > is a error or not and not sure will I lost the data in the output. > The command which I am using to save the data. > saveDF(banking_l1_1,"banking_l1_v2.csv",source="csv",mode="append",schema="true") > 16/09/17 08:03:28 ERROR InsertIntoHadoopFsRelationCommand: Aborting job. > java.io.IOException: Failed to rename > DeprecatedRawLocalFileStatus{path=file:/nfspartition/sankar/banking_l1_v2.csv/_temporary/0/task_201609170802_0013_m_000000/part-r-00000-46a7f178-2490-444e-9110-510978eaaecb.csv; > isDirectory=false; length=436486316; replication=1; blocksize=33554432; > modification_time=1474099400000; access_time=0; owner=; group=; > permission=rw-rw-rw-; isSymlink=false} to > file:/nfspartition/sankar/banking_l1_v2.csv/part-r-00000-46a7f178-2490-444e-9110-510978eaaecb.csv > at > org.apache.hadoop.mapreduce.lib.output.FileOutputCommitter.mergePaths(FileOutputCommitter.java:371) > at > org.apache.hadoop.mapreduce.lib.output.FileOutputCommitter.mergePaths(FileOutputCommitter.java:384) > at > org.apache.hadoop.mapreduce.lib.output.FileOutputCommitter.commitJob(FileOutputCommitter.java:326) > at > org.apache.spark.sql.execution.datasources.BaseWriterContainer.commitJob(WriterContainer.scala:222) > at > org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand$$anonfun$run$1.apply$mcV$sp(InsertIntoHadoopFsRelationCommand.scala:144) > at > org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand$$anonfun$run$1.apply(InsertIntoHadoopFsRelationCommand.scala:115) > at > org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand$$anonfun$run$1.apply(InsertIntoHadoopFsRelationCommand.scala:115) > at > org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:57) > at > org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand.run(InsertIntoHadoopFsRelationCommand.scala:115) > at > org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult$lzycompute(commands.scala:60) > at > org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult(commands.scala:58) > at > org.apache.spark.sql.execution.command.ExecutedCommandExec.doExecute(commands.scala:74) > at > org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:115) > at > org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:115) > at > org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:136) > at > org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) > at > org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:133) > at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:114) > at > org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:86) > at > org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:86) > at > org.apache.spark.sql.execution.datasources.DataSource.write(DataSource.scala:487) > at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:211) > at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:194) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:498) > at > org.apache.spark.api.r.RBackendHandler.handleMethodCall(RBackendHandler.scala:141) > at > org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:86) > at > org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:38) > at > io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105) > at > io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308) > at > io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294) > at > io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:103) > at > io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308) > at > io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294) > at > io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:244) > at > io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308) > at > io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294) > at > io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:846) > at > io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131) > at > io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:511) > at > io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468) > at > io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382) > at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354) > at > io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:111) > at > io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:137) > at java.lang.Thread.run(Thread.java:745) > 16/09/17 08:03:28 WARN FileUtil: Failed to delete file or dir > [/nfspartition/sankar/banking_l1_v2.csv/_temporary/0/task_201609170802_0013_m_000000/.part-r-00000-46a7f178-2490-444e-9110-510978eaaecb.csv.crc]: > it still exists. > 16/09/17 08:03:28 WARN FileUtil: Failed to delete file or dir > [/nfspartition/sankar/banking_l1_v2.csv/_temporary/0/task_201609170802_0013_m_000000/part-r-00000-46a7f178-2490-444e-9110-510978eaaecb.csv]: > it still exists. > 16/09/17 08:03:28 ERROR DefaultWriterContainer: Job job_201609170803_0000 > aborted. > 16/09/17 08:03:28 ERROR RBackendHandler: save on 625 failed > Error in invokeJava(isStatic = FALSE, objId$id, methodName, ...) : > org.apache.spark.SparkException: Job aborted. > at > org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand$$anonfun$run$1.apply$mcV$sp(InsertIntoHadoopFsRelationCommand.scala:149) > at > org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand$$anonfun$run$1.apply(InsertIntoHadoopFsRelationCommand.scala:115) > at > org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand$$anonfun$run$1.apply(InsertIntoHadoopFsRelationCommand.scala:115) > at > org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:57) > at > org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand.run(InsertIntoHadoopFsRelationCommand.scala:115) > at > org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult$lzycompute(commands.scala:60) > at > org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult(commands.scala:58) > at org.apache.spark.sql.execution.command.ExecutedCommandExec.doE > Thanks > Sankar -- This message was sent by Atlassian JIRA (v6.3.4#6332) --------------------------------------------------------------------- To unsubscribe, e-mail: issues-unsubscr...@spark.apache.org For additional commands, e-mail: issues-h...@spark.apache.org