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https://issues.apache.org/jira/browse/SPARK-19947?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16379282#comment-16379282
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Bago Amirbekian commented on SPARK-19947:
-----------------------------------------

I think this was resolved by [https://github.com/apache/spark/pull/18496] &; 
[https://github.com/apache/spark/pull/18613].

> RFormulaModel always throws Exception on transforming data with NULL or 
> Unseen labels
> -------------------------------------------------------------------------------------
>
>                 Key: SPARK-19947
>                 URL: https://issues.apache.org/jira/browse/SPARK-19947
>             Project: Spark
>          Issue Type: Improvement
>          Components: ML
>    Affects Versions: 2.1.0
>            Reporter: Andrey Yatsuk
>            Priority: Major
>
> I have trained ML model and big data table in parquet. I want add new column 
> to this table with predicted values. I can't lose any data, but can having 
> null values in it.
> RFormulaModel.fit() method creates new StringIndexer with default 
> (handleInvalid="error") parameter. Also VectorAssembler on NULL values 
> throwing Exception. So I must call df.na.drop() to transform this DataFrame 
> and I don't want to do this.
> Need add to RFormula new parameter like handleInvalid in StringIndexer.
> Or add transform(Seq<Column>): Vector method which user can use as UDF method 
> in df.withColumn("predicted", functions.callUDF(rFormulaModel::transform, 
> Seq<Column>))



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