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https://issues.apache.org/jira/browse/SPARK-20389?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16482408#comment-16482408
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Arseniy Tashoyan commented on SPARK-20389:
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I confirm: the issue is in place for Spark 2.2.1. I hit it when running KMeans
on a dataset of ~4M records when trying to get ~500 clusters.
I tried to avoid the problem by increasing spark.sql.shuffle.partitions to a
large number like 500, but then I got OutOfMemoryError: Heap space on
executors. So this workaround is suitable only with a capable cluster at hands.
> Upgrade kryo to fix NegativeArraySizeException
> ----------------------------------------------
>
> Key: SPARK-20389
> URL: https://issues.apache.org/jira/browse/SPARK-20389
> Project: Spark
> Issue Type: Bug
> Components: Spark Core, Spark Submit
> Affects Versions: 2.1.0
> Environment: Linux, Centos7, jdk8
> Reporter: Georg Heiler
> Priority: Major
>
> I am experiencing an issue with Kryo when writing parquet files. Similar to
> https://github.com/broadinstitute/gatk/issues/1524 a
> NegativeArraySizeException occurs. Apparently this is fixed in a current Kryo
> version. Spark is still using the very old 3.3 Kryo.
> Can you please upgrade to a fixed Kryo version.
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