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Mojmir Vinkler commented on SPARK-5250: --------------------------------------- Just tested with Scala and got the same error. > EOFException in when reading gzipped files from S3 with wholeTextFiles > ---------------------------------------------------------------------- > > Key: SPARK-5250 > URL: https://issues.apache.org/jira/browse/SPARK-5250 > Project: Spark > Issue Type: Bug > Components: PySpark > Affects Versions: 1.2.0 > Reporter: Mojmir Vinkler > > I get an `EOFException` error when reading *some* gzipped files using > `sc.wholeTextFiles`. It happens to just a few files, I thought that the file > is corrupted, but I was able to read it without problems using `sc.textFile` > (and pandas). > Traceback for command > `sc.wholeTextFiles('s3n://s3bucket/2525322021051.csv.gz').collect()` > {code} > --------------------------------------------------------------------------- > Py4JJavaError Traceback (most recent call last) > <ipython-input-104-943aab11de03> in <module>() > ----> 1 sc.wholeTextFiles('s3n://s3bucket/2525322021051.csv.gz').collect() > /home/ubuntu/databricks/spark/python/pyspark/rdd.py in collect(self) > 674 """ > 675 with SCCallSiteSync(self.context) as css: > --> 676 bytesInJava = self._jrdd.collect().iterator() > 677 return list(self._collect_iterator_through_file(bytesInJava)) > 678 > /home/ubuntu/databricks/spark/python/lib/py4j-0.8.2.1-src.zip/py4j/java_gateway.py > in __call__(self, *args) > 536 answer = self.gateway_client.send_command(command) > 537 return_value = get_return_value(answer, self.gateway_client, > --> 538 self.target_id, self.name) > 539 > 540 for temp_arg in temp_args: > /home/ubuntu/databricks/spark/python/lib/py4j-0.8.2.1-src.zip/py4j/protocol.py > in get_return_value(answer, gateway_client, target_id, name) > 298 raise Py4JJavaError( > 299 'An error occurred while calling {0}{1}{2}.\n'. > --> 300 format(target_id, '.', name), value) > 301 else: > 302 raise Py4JError( > Py4JJavaError: An error occurred while calling o1576.collect. > : org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 > in stage 41.0 failed 4 times, most recent failure: Lost task 0.3 in stage > 41.0 (TID 4720, ip-10-0-241-126.ec2.internal): java.io.EOFException: > Unexpected end of input stream > at > org.apache.hadoop.io.compress.DecompressorStream.decompress(DecompressorStream.java:137) > at > org.apache.hadoop.io.compress.DecompressorStream.read(DecompressorStream.java:77) > at java.io.InputStream.read(InputStream.java:101) > at com.google.common.io.ByteStreams.copy(ByteStreams.java:207) > at com.google.common.io.ByteStreams.toByteArray(ByteStreams.java:252) > at > org.apache.spark.input.WholeTextFileRecordReader.nextKeyValue(WholeTextFileRecordReader.scala:73) > at > org.apache.hadoop.mapreduce.lib.input.CombineFileRecordReader.nextKeyValue(CombineFileRecordReader.java:69) > at > org.apache.spark.rdd.NewHadoopRDD$$anon$1.hasNext(NewHadoopRDD.scala:145) > at > org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:39) > at scala.collection.Iterator$class.foreach(Iterator.scala:727) > at > org.apache.spark.InterruptibleIterator.foreach(InterruptibleIterator.scala:28) > at > scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) > at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) > at > org.apache.spark.InterruptibleIterator.to(InterruptibleIterator.scala:28) > at > scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) > at > org.apache.spark.InterruptibleIterator.toBuffer(InterruptibleIterator.scala:28) > at > scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) > at > org.apache.spark.InterruptibleIterator.toArray(InterruptibleIterator.scala:28) > at org.apache.spark.rdd.RDD$$anonfun$16.apply(RDD.scala:780) > at org.apache.spark.rdd.RDD$$anonfun$16.apply(RDD.scala:780) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1314) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1314) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:61) > at org.apache.spark.scheduler.Task.run(Task.scala:56) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:196) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > at java.lang.Thread.run(Thread.java:745) > Driver stacktrace: > at > org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1214) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1203) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1202) > at > scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) > at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47) > at > org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1202) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:696) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:696) > at scala.Option.foreach(Option.scala:236) > at > org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:696) > at > org.apache.spark.scheduler.DAGSchedulerEventProcessActor$$anonfun$receive$2.applyOrElse(DAGScheduler.scala:1420) > at akka.actor.Actor$class.aroundReceive(Actor.scala:465) > at > org.apache.spark.scheduler.DAGSchedulerEventProcessActor.aroundReceive(DAGScheduler.scala:1375) > at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516) > at akka.actor.ActorCell.invoke(ActorCell.scala:487) > at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238) > at akka.dispatch.Mailbox.run(Mailbox.scala:220) > at > akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:393) > at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) > at > scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) > at > scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) > at > scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) > {code} -- This message was sent by Atlassian JIRA (v6.3.4#6332) --------------------------------------------------------------------- To unsubscribe, e-mail: issues-unsubscr...@spark.apache.org For additional commands, e-mail: issues-h...@spark.apache.org