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https://issues.apache.org/jira/browse/SPARK-21770?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17100948#comment-17100948
]
David Mavashev edited comment on SPARK-21770 at 5/6/20, 4:24 PM:
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Hi,
Im using version 2.4.5, I'm hitting the above issue, in which the whole job is
failing because of a single row that gets a 0 vector probabilities:
{code:java}
class: SparkException, cause: Failed to execute user defined
function($anonfun$2:
(struct<type:tinyint,size:int,indices:array<int>,values:array<double>>) =>
struct<type:tinyint,size:int,indices:array<int>,values:array<double>>)
org.apache.spark.SparkException: Job aborted due to stage failure: Task 5 in
stage 10251.0 failed 1 times, most recent failure: Lost task 5.0 in stage
10251.0 (TID 128916, localhost, executor driver):
org.apache.spark.SparkException: Failed to execute user defined
function($anonfun$2:
(struct<type:tinyint,size:int,indices:array<int>,values:array<double>>) =>
struct<type:tinyint,size:int,indices:array<int>,values:array<double>>)
at
org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown
Source)
at
org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at
org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$13$$anon$1.hasNext(WholeStageCodegenExec.scala:636)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at
org.apache.spark.rdd.RDD$$anonfun$foreach$1$$anonfun$apply$27.apply(RDD.scala:972)
at
org.apache.spark.rdd.RDD$$anonfun$foreach$1$$anonfun$apply$27.apply(RDD.scala:972)
at
org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101)
at
org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:123)
at
org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.IllegalArgumentException: requirement failed: Can't
normalize the 0-vector.
at scala.Predef$.require(Predef.scala:224)
at
org.apache.spark.ml.classification.ProbabilisticClassificationModel$.normalizeToProbabilitiesInPlace(ProbabilisticClassifier.scala:244)
at
org.apache.spark.ml.classification.DecisionTreeClassificationModel.raw2probabilityInPlace(DecisionTreeClassifier.scala:198)
at
org.apache.spark.ml.classification.ProbabilisticClassificationModel.raw2probability(ProbabilisticClassifier.scala:172)
at
org.apache.spark.ml.classification.ProbabilisticClassificationModel$$anonfun$2.apply(ProbabilisticClassifier.scala:124)
at
org.apache.spark.ml.classification.ProbabilisticClassificationModel$$anonfun$2.apply(ProbabilisticClassifier.scala:124)
... 19 more
{code}
What should be the correct handling to make this work, this is randomly
happening on models we generate with Random Forest Classifier.
was (Author: davidmav86):
Hi,
I'm hitting the above issue, in which the whole job is failing because of a
single row that gets a 0 vector probabilities:
{code:java}
class: SparkException, cause: Failed to execute user defined
function($anonfun$2:
(struct<type:tinyint,size:int,indices:array<int>,values:array<double>>) =>
struct<type:tinyint,size:int,indices:array<int>,values:array<double>>)
org.apache.spark.SparkException: Job aborted due to stage failure: Task 5 in
stage 10251.0 failed 1 times, most recent failure: Lost task 5.0 in stage
10251.0 (TID 128916, localhost, executor driver):
org.apache.spark.SparkException: Failed to execute user defined
function($anonfun$2:
(struct<type:tinyint,size:int,indices:array<int>,values:array<double>>) =>
struct<type:tinyint,size:int,indices:array<int>,values:array<double>>)
at
org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown
Source)
at
org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at
org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$13$$anon$1.hasNext(WholeStageCodegenExec.scala:636)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at
org.apache.spark.rdd.RDD$$anonfun$foreach$1$$anonfun$apply$27.apply(RDD.scala:972)
at
org.apache.spark.rdd.RDD$$anonfun$foreach$1$$anonfun$apply$27.apply(RDD.scala:972)
at
org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101)
at
org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:123)
at
org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.IllegalArgumentException: requirement failed: Can't
normalize the 0-vector.
at scala.Predef$.require(Predef.scala:224)
at
org.apache.spark.ml.classification.ProbabilisticClassificationModel$.normalizeToProbabilitiesInPlace(ProbabilisticClassifier.scala:244)
at
org.apache.spark.ml.classification.DecisionTreeClassificationModel.raw2probabilityInPlace(DecisionTreeClassifier.scala:198)
at
org.apache.spark.ml.classification.ProbabilisticClassificationModel.raw2probability(ProbabilisticClassifier.scala:172)
at
org.apache.spark.ml.classification.ProbabilisticClassificationModel$$anonfun$2.apply(ProbabilisticClassifier.scala:124)
at
org.apache.spark.ml.classification.ProbabilisticClassificationModel$$anonfun$2.apply(ProbabilisticClassifier.scala:124)
... 19 more
{code}
What should be the correct handling to make this work, this is randomly
happening on models we generate with Random Forest Classifier.
> ProbabilisticClassificationModel: Improve normalization of all-zero raw
> predictions
> -----------------------------------------------------------------------------------
>
> Key: SPARK-21770
> URL: https://issues.apache.org/jira/browse/SPARK-21770
> Project: Spark
> Issue Type: Improvement
> Components: ML
> Affects Versions: 2.3.0
> Reporter: Siddharth Murching
> Assignee: Weichen Xu
> Priority: Minor
> Fix For: 2.3.0
>
>
> Given an n-element raw prediction vector of all-zeros,
> ProbabilisticClassifierModel.normalizeToProbabilitiesInPlace() should output
> a probability vector of all-equal 1/n entries
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