[
https://issues.apache.org/jira/browse/SPARK-33113?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Jacek Pliszka updated SPARK-33113:
----------------------------------
Description:
Running in databricks on Azure
library("arrow")
library("SparkR")
df <- as.DataFrame(list("A", "B", "C"), schema="ColumnA")
udf <- function(key, x) data.frame(out=c("dfs"))
This works:
sparkR.session(master = "local[*]",
sparkConfig=list(spark.sql.execution.arrow.sparkr.enabled = "false"))
df1 <- gapply(df, c("ColumnA"), udf, "out String")
collect(df1)
This fails:
sparkR.session(master = "local[*]",
sparkConfig=list(spark.sql.execution.arrow.sparkr.enabled = "true"))
df2 <- gapply(df, c("ColumnA"), udf, "out String")
collect(df2)
with error
\{{ Error in readBin(con, raw(), as.integer(dataLen), endian = "big") :
}}Error in readBin(con, raw(), as.integer(dataLen), endian = "big") : invalid
'n' argument
Error in readBin(con, raw(), as.integer(dataLen), endian = "big") : invalid
'n' argument In addition: Warning messages: 1: Use 'read_ipc_stream' or
'read_feather' instead. 2: Use 'read_ipc_stream' or 'read_feather' instead.
Clicking through Failed Stages to Failure Reason:
Job aborted due to stage failure: Task 49 in stage 1843.0 failed 4 times, most
recent failure: Lost task 49.3 in stage 1843.0 (TID 89810, 10.99.0.5, executor
0): java.lang.UnsupportedOperationException
at
org.apache.spark.sql.vectorized.ArrowColumnVector$ArrowVectorAccessor.getUTF8String(ArrowColumnVector.java:233)
at
org.apache.spark.sql.vectorized.ArrowColumnVector.getUTF8String(ArrowColumnVector.java:109)
at
org.apache.spark.sql.vectorized.ColumnarBatchRow.getUTF8String(ColumnarBatch.java:220)
at
org.apache.spark.sql.catalyst.expressions.GeneratedClass$SpecificUnsafeProjection.apply(Unknown
Source)
at
org.apache.spark.sql.catalyst.expressions.GeneratedClass$SpecificUnsafeProjection.apply(Unknown
Source)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
at
org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$1.$anonfun$next$1(ArrowConverters.scala:131)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1559)
at
org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$1.next(ArrowConverters.scala:140)
at
org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$1.next(ArrowConverters.scala:115)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
at scala.collection.Iterator.foreach(Iterator.scala:941)
at scala.collection.Iterator.foreach$(Iterator.scala:941)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1429)
at scala.collection.generic.Growable.$plus$plus$eq(Growable.scala:62)
at scala.collection.generic.Growable.$plus$plus$eq$(Growable.scala:53)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:105)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:49)
at scala.collection.TraversableOnce.to(TraversableOnce.scala:315)
at scala.collection.TraversableOnce.to$(TraversableOnce.scala:313)
at scala.collection.AbstractIterator.to(Iterator.scala:1429)
at scala.collection.TraversableOnce.toBuffer(TraversableOnce.scala:307)
at scala.collection.TraversableOnce.toBuffer$(TraversableOnce.scala:307)
at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1429)
at scala.collection.TraversableOnce.toArray(TraversableOnce.scala:294)
at scala.collection.TraversableOnce.toArray$(TraversableOnce.scala:288)
at scala.collection.AbstractIterator.toArray(Iterator.scala:1429)
at
org.apache.spark.sql.Dataset.$anonfun$collectAsArrowToR$3(Dataset.scala:3589)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.doRunTask(Task.scala:144)
at org.apache.spark.scheduler.Task.run(Task.scala:117)
at
org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$9(Executor.scala:639)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1559)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:642)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Driver stacktrace:
was:
Running in databricks on Azure
library("arrow")
library("SparkR")
df <- as.DataFrame(list("A", "B", "C"), schema="ColumnA")
udf <- function(key, x) data.frame(out=c("dfs"), stringAsFactors=FALSE)
This works:
sparkR.session(master = "local[*]",
sparkConfig=list(spark.sql.execution.arrow.sparkr.enabled = "false"))
df1 <- gapply(df, c("ColumnA"), udf, "out String")
collect(df1)
This fails:
sparkR.session(master = "local[*]",
sparkConfig=list(spark.sql.execution.arrow.sparkr.enabled = "true"))
df2 <- gapply(df, c("ColumnA"), udf, "out String")
collect(df2)
with error
{{ Error in readBin(con, raw(), as.integer(dataLen), endian = "big") : }}Error
in readBin(con, raw(), as.integer(dataLen), endian = "big") : invalid 'n'
argument
Error in readBin(con, raw(), as.integer(dataLen), endian = "big") : invalid 'n'
argument In addition: Warning messages: 1: Use 'read_ipc_stream' or
'read_feather' instead. 2: Use 'read_ipc_stream' or 'read_feather' instead.
Clicking through Failed Stages to Failure Reason:
Job aborted due to stage failure: Task 49 in stage 1843.0 failed 4 times, most
recent failure: Lost task 49.3 in stage 1843.0 (TID 89810, 10.99.0.5, executor
0): java.lang.UnsupportedOperationException
at
org.apache.spark.sql.vectorized.ArrowColumnVector$ArrowVectorAccessor.getUTF8String(ArrowColumnVector.java:233)
at
org.apache.spark.sql.vectorized.ArrowColumnVector.getUTF8String(ArrowColumnVector.java:109)
at
org.apache.spark.sql.vectorized.ColumnarBatchRow.getUTF8String(ColumnarBatch.java:220)
at
org.apache.spark.sql.catalyst.expressions.GeneratedClass$SpecificUnsafeProjection.apply(Unknown
Source)
at
org.apache.spark.sql.catalyst.expressions.GeneratedClass$SpecificUnsafeProjection.apply(Unknown
Source)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
at
org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$1.$anonfun$next$1(ArrowConverters.scala:131)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1559)
at
org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$1.next(ArrowConverters.scala:140)
at
org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$1.next(ArrowConverters.scala:115)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
at scala.collection.Iterator.foreach(Iterator.scala:941)
at scala.collection.Iterator.foreach$(Iterator.scala:941)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1429)
at scala.collection.generic.Growable.$plus$plus$eq(Growable.scala:62)
at scala.collection.generic.Growable.$plus$plus$eq$(Growable.scala:53)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:105)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:49)
at scala.collection.TraversableOnce.to(TraversableOnce.scala:315)
at scala.collection.TraversableOnce.to$(TraversableOnce.scala:313)
at scala.collection.AbstractIterator.to(Iterator.scala:1429)
at scala.collection.TraversableOnce.toBuffer(TraversableOnce.scala:307)
at scala.collection.TraversableOnce.toBuffer$(TraversableOnce.scala:307)
at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1429)
at scala.collection.TraversableOnce.toArray(TraversableOnce.scala:294)
at scala.collection.TraversableOnce.toArray$(TraversableOnce.scala:288)
at scala.collection.AbstractIterator.toArray(Iterator.scala:1429)
at
org.apache.spark.sql.Dataset.$anonfun$collectAsArrowToR$3(Dataset.scala:3589)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.doRunTask(Task.scala:144)
at org.apache.spark.scheduler.Task.run(Task.scala:117)
at
org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$9(Executor.scala:639)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1559)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:642)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Driver stacktrace:
> [SparkR] gapply works with arrow disabled, fails with arrow enabled
> -------------------------------------------------------------------
>
> Key: SPARK-33113
> URL: https://issues.apache.org/jira/browse/SPARK-33113
> Project: Spark
> Issue Type: Bug
> Components: R
> Affects Versions: 3.0.0, 3.0.1
> Reporter: Jacek Pliszka
> Priority: Major
>
> Running in databricks on Azure
> library("arrow")
> library("SparkR")
> df <- as.DataFrame(list("A", "B", "C"), schema="ColumnA")
> udf <- function(key, x) data.frame(out=c("dfs"))
>
> This works:
> sparkR.session(master = "local[*]",
> sparkConfig=list(spark.sql.execution.arrow.sparkr.enabled = "false"))
> df1 <- gapply(df, c("ColumnA"), udf, "out String")
> collect(df1)
> This fails:
> sparkR.session(master = "local[*]",
> sparkConfig=list(spark.sql.execution.arrow.sparkr.enabled = "true"))
> df2 <- gapply(df, c("ColumnA"), udf, "out String")
> collect(df2)
>
> with error
> \{{ Error in readBin(con, raw(), as.integer(dataLen), endian = "big") :
> }}Error in readBin(con, raw(), as.integer(dataLen), endian = "big") : invalid
> 'n' argument
> Error in readBin(con, raw(), as.integer(dataLen), endian = "big") : invalid
> 'n' argument In addition: Warning messages: 1: Use 'read_ipc_stream' or
> 'read_feather' instead. 2: Use 'read_ipc_stream' or 'read_feather' instead.
>
> Clicking through Failed Stages to Failure Reason:
>
> Job aborted due to stage failure: Task 49 in stage 1843.0 failed 4 times,
> most recent failure: Lost task 49.3 in stage 1843.0 (TID 89810, 10.99.0.5,
> executor 0): java.lang.UnsupportedOperationException
> at
> org.apache.spark.sql.vectorized.ArrowColumnVector$ArrowVectorAccessor.getUTF8String(ArrowColumnVector.java:233)
> at
> org.apache.spark.sql.vectorized.ArrowColumnVector.getUTF8String(ArrowColumnVector.java:109)
> at
> org.apache.spark.sql.vectorized.ColumnarBatchRow.getUTF8String(ColumnarBatch.java:220)
> at
> org.apache.spark.sql.catalyst.expressions.GeneratedClass$SpecificUnsafeProjection.apply(Unknown
> Source)
> at
> org.apache.spark.sql.catalyst.expressions.GeneratedClass$SpecificUnsafeProjection.apply(Unknown
> Source)
> at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
> at
> org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$1.$anonfun$next$1(ArrowConverters.scala:131)
> at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
> at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1559)
> at
> org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$1.next(ArrowConverters.scala:140)
> at
> org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$1.next(ArrowConverters.scala:115)
> at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
> at scala.collection.Iterator.foreach(Iterator.scala:941)
> at scala.collection.Iterator.foreach$(Iterator.scala:941)
> at scala.collection.AbstractIterator.foreach(Iterator.scala:1429)
> at scala.collection.generic.Growable.$plus$plus$eq(Growable.scala:62)
> at scala.collection.generic.Growable.$plus$plus$eq$(Growable.scala:53)
> at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:105)
> at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:49)
> at scala.collection.TraversableOnce.to(TraversableOnce.scala:315)
> at scala.collection.TraversableOnce.to$(TraversableOnce.scala:313)
> at scala.collection.AbstractIterator.to(Iterator.scala:1429)
> at scala.collection.TraversableOnce.toBuffer(TraversableOnce.scala:307)
> at scala.collection.TraversableOnce.toBuffer$(TraversableOnce.scala:307)
> at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1429)
> at scala.collection.TraversableOnce.toArray(TraversableOnce.scala:294)
> at scala.collection.TraversableOnce.toArray$(TraversableOnce.scala:288)
> at scala.collection.AbstractIterator.toArray(Iterator.scala:1429)
> at
> org.apache.spark.sql.Dataset.$anonfun$collectAsArrowToR$3(Dataset.scala:3589)
> at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
> at org.apache.spark.scheduler.Task.doRunTask(Task.scala:144)
> at org.apache.spark.scheduler.Task.run(Task.scala:117)
> at
> org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$9(Executor.scala:639)
> at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1559)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:642)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
> at java.lang.Thread.run(Thread.java:748)
> Driver stacktrace:
>
>
>
>
>
>
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