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Apache Spark commented on SPARK-6024: ------------------------------------- User 'yhuai' has created a pull request for this issue: https://github.com/apache/spark/pull/4795 > When a data source table has too many columns, it's schema cannot be stored > in metastore. > ----------------------------------------------------------------------------------------- > > Key: SPARK-6024 > URL: https://issues.apache.org/jira/browse/SPARK-6024 > Project: Spark > Issue Type: Bug > Components: SQL > Reporter: Yin Huai > Priority: Blocker > > Because we are using table properties of a Hive metastore table to store the > schema, when a schema is too wide, we cannot persist it in metastore. > {code} > 15/02/25 18:13:50 ERROR metastore.RetryingHMSHandler: Retrying HMSHandler > after 1000 ms (attempt 1 of 1) with error: javax.jdo.JDODataStoreException: > Put request failed : INSERT INTO TABLE_PARAMS (PARAM_VALUE,TBL_ID,PARAM_KEY) > VALUES (?,?,?) > at > org.datanucleus.api.jdo.NucleusJDOHelper.getJDOExceptionForNucleusException(NucleusJDOHelper.java:451) > at > org.datanucleus.api.jdo.JDOPersistenceManager.jdoMakePersistent(JDOPersistenceManager.java:732) > at > org.datanucleus.api.jdo.JDOPersistenceManager.makePersistent(JDOPersistenceManager.java:752) > at > org.apache.hadoop.hive.metastore.ObjectStore.createTable(ObjectStore.java:719) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:606) > at > org.apache.hadoop.hive.metastore.RawStoreProxy.invoke(RawStoreProxy.java:108) > at com.sun.proxy.$Proxy15.createTable(Unknown Source) > at > org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.create_table_core(HiveMetaStore.java:1261) > at > org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.create_table_with_environment_context(HiveMetaStore.java:1294) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:606) > at > org.apache.hadoop.hive.metastore.RetryingHMSHandler.invoke(RetryingHMSHandler.java:105) > at com.sun.proxy.$Proxy16.create_table_with_environment_context(Unknown > Source) > at > org.apache.hadoop.hive.metastore.HiveMetaStoreClient.createTable(HiveMetaStoreClient.java:558) > at > org.apache.hadoop.hive.metastore.HiveMetaStoreClient.createTable(HiveMetaStoreClient.java:547) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:606) > at > org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.invoke(RetryingMetaStoreClient.java:89) > at com.sun.proxy.$Proxy17.createTable(Unknown Source) > at org.apache.hadoop.hive.ql.metadata.Hive.createTable(Hive.java:613) > at > org.apache.spark.sql.hive.HiveMetastoreCatalog.createDataSourceTable(HiveMetastoreCatalog.scala:136) > at > org.apache.spark.sql.hive.execution.CreateMetastoreDataSourceAsSelect.run(commands.scala:243) > at > org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult$lzycompute(commands.scala:55) > at > org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult(commands.scala:55) > at > org.apache.spark.sql.execution.ExecutedCommand.execute(commands.scala:65) > at > org.apache.spark.sql.SQLContext$QueryExecution.toRdd$lzycompute(SQLContext.scala:1092) > at > org.apache.spark.sql.SQLContext$QueryExecution.toRdd(SQLContext.scala:1092) > at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:1013) > at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:963) > at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:929) > at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:907) > at > $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:25) > at > $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:30) > at > $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:32) > at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:34) > at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:36) > at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:38) > at $line39.$read$$iwC$$iwC$$iwC$$iwC.<init>(<console>:40) > at $line39.$read$$iwC$$iwC$$iwC.<init>(<console>:42) > at $line39.$read$$iwC$$iwC.<init>(<console>:44) > at $line39.$read$$iwC.<init>(<console>:46) > at $line39.$read.<init>(<console>:48) > at $line39.$read$.<init>(<console>:52) > at $line39.$read$.<clinit>(<console>) > at $line39.$eval$.<init>(<console>:7) > at $line39.$eval$.<clinit>(<console>) > at $line39.$eval.$print(<console>) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:606) > at > org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065) > at > org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1338) > at > org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840) > at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871) > at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819) > at > org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:856) > at > org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:901) > at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:813) > at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:656) > at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:664) > at > org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$loop(SparkILoop.scala:669) > at > org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:996) > at > org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:944) > at > org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:944) > at > scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135) > at > org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$process(SparkILoop.scala:944) > at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1058) > at org.apache.spark.repl.Main$.main(Main.scala:31) > at org.apache.spark.repl.Main.main(Main.scala) > NestedThrowablesStackTrace: > org.datanucleus.store.rdbms.exceptions.MappedDatastoreException: INSERT INTO > TABLE_PARAMS (PARAM_VALUE,TBL_ID,PARAM_KEY) VALUES (?,?,?) > at > org.datanucleus.store.rdbms.scostore.JoinMapStore.internalPut(JoinMapStore.java:1078) > at > org.datanucleus.store.rdbms.scostore.JoinMapStore.putAll(JoinMapStore.java:220) > at > org.datanucleus.store.rdbms.mapping.java.MapMapping.postInsert(MapMapping.java:137) > at > org.datanucleus.store.rdbms.request.InsertRequest.execute(InsertRequest.java:519) > at > org.datanucleus.store.rdbms.RDBMSPersistenceHandler.insertTable(RDBMSPersistenceHandler.java:167) > at > org.datanucleus.store.rdbms.RDBMSPersistenceHandler.insertObject(RDBMSPersistenceHandler.java:143) > at > org.datanucleus.state.JDOStateManager.internalMakePersistent(JDOStateManager.java:3784) > at > org.datanucleus.state.JDOStateManager.makePersistent(JDOStateManager.java:3760) > at > org.datanucleus.ExecutionContextImpl.persistObjectInternal(ExecutionContextImpl.java:2219) > at > org.datanucleus.ExecutionContextImpl.persistObjectWork(ExecutionContextImpl.java:2065) > at > org.datanucleus.ExecutionContextImpl.persistObject(ExecutionContextImpl.java:1913) > at > org.datanucleus.ExecutionContextThreadedImpl.persistObject(ExecutionContextThreadedImpl.java:217) > at > org.datanucleus.api.jdo.JDOPersistenceManager.jdoMakePersistent(JDOPersistenceManager.java:727) > at > org.datanucleus.api.jdo.JDOPersistenceManager.makePersistent(JDOPersistenceManager.java:752) > at > org.apache.hadoop.hive.metastore.ObjectStore.createTable(ObjectStore.java:719) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:606) > at > org.apache.hadoop.hive.metastore.RawStoreProxy.invoke(RawStoreProxy.java:108) > at com.sun.proxy.$Proxy15.createTable(Unknown Source) > at > org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.create_table_core(HiveMetaStore.java:1261) > at > org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.create_table_with_environment_context(HiveMetaStore.java:1294) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:606) > at > org.apache.hadoop.hive.metastore.RetryingHMSHandler.invoke(RetryingHMSHandler.java:105) > at com.sun.proxy.$Proxy16.create_table_with_environment_context(Unknown > Source) > at > org.apache.hadoop.hive.metastore.HiveMetaStoreClient.createTable(HiveMetaStoreClient.java:558) > at > org.apache.hadoop.hive.metastore.HiveMetaStoreClient.createTable(HiveMetaStoreClient.java:547) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:606) > at > org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.invoke(RetryingMetaStoreClient.java:89) > at com.sun.proxy.$Proxy17.createTable(Unknown Source) > at org.apache.hadoop.hive.ql.metadata.Hive.createTable(Hive.java:613) > at > org.apache.spark.sql.hive.HiveMetastoreCatalog.createDataSourceTable(HiveMetastoreCatalog.scala:136) > at > org.apache.spark.sql.hive.execution.CreateMetastoreDataSourceAsSelect.run(commands.scala:243) > at > org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult$lzycompute(commands.scala:55) > at > org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult(commands.scala:55) > at > org.apache.spark.sql.execution.ExecutedCommand.execute(commands.scala:65) > at > org.apache.spark.sql.SQLContext$QueryExecution.toRdd$lzycompute(SQLContext.scala:1092) > at > org.apache.spark.sql.SQLContext$QueryExecution.toRdd(SQLContext.scala:1092) > at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:1013) > at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:963) > at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:929) > at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:907) > at > $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:25) > at > $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:30) > at > $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:32) > at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:34) > at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:36) > at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:38) > at $line39.$read$$iwC$$iwC$$iwC$$iwC.<init>(<console>:40) > at $line39.$read$$iwC$$iwC$$iwC.<init>(<console>:42) > at $line39.$read$$iwC$$iwC.<init>(<console>:44) > at $line39.$read$$iwC.<init>(<console>:46) > at $line39.$read.<init>(<console>:48) > at $line39.$read$.<init>(<console>:52) > at $line39.$read$.<clinit>(<console>) > at $line39.$eval$.<init>(<console>:7) > at $line39.$eval$.<clinit>(<console>) > at $line39.$eval.$print(<console>) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:606) > at > org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065) > at > org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1338) > at > org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840) > at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871) > at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819) > at > org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:856) > at > org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:901) > at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:813) > at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:656) > at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:664) > at > org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$loop(SparkILoop.scala:669) > at > org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:996) > at > org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:944) > at > org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:944) > at > scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135) > at > org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$process(SparkILoop.scala:944) > at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1058) > at org.apache.spark.repl.Main$.main(Main.scala:31) > at org.apache.spark.repl.Main.main(Main.scala) > Caused by: java.sql.SQLDataException: A truncation error was encountered > trying to shrink VARCHAR > '{"type":"struct","fields":[{"name":"contributors","type":"st&' to length > 4000. > at > org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown > Source) > at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown > Source) > at > org.apache.derby.impl.jdbc.TransactionResourceImpl.wrapInSQLException(Unknown > Source) > at > org.apache.derby.impl.jdbc.TransactionResourceImpl.handleException(Unknown > Source) > at org.apache.derby.impl.jdbc.EmbedConnection.handleException(Unknown > Source) > at org.apache.derby.impl.jdbc.ConnectionChild.handleException(Unknown > Source) > at org.apache.derby.impl.jdbc.EmbedStatement.executeStatement(Unknown > Source) > at > org.apache.derby.impl.jdbc.EmbedPreparedStatement.executeStatement(Unknown > Source) > at > org.apache.derby.impl.jdbc.EmbedPreparedStatement.executeLargeUpdate(Unknown > Source) > at > org.apache.derby.impl.jdbc.EmbedPreparedStatement.executeUpdate(Unknown > Source) > at > com.jolbox.bonecp.PreparedStatementHandle.executeUpdate(PreparedStatementHandle.java:205) > at > org.datanucleus.store.rdbms.ParamLoggingPreparedStatement.executeUpdate(ParamLoggingPreparedStatement.java:399) > at > org.datanucleus.store.rdbms.SQLController.executeStatementUpdate(SQLController.java:439) > at > org.datanucleus.store.rdbms.scostore.JoinMapStore.internalPut(JoinMapStore.java:1069) > ... 87 more > Caused by: java.sql.SQLException: A truncation error was encountered trying > to shrink VARCHAR > '{"type":"struct","fields":[{"name":"contributors","type":"st&' to length > 4000. > at > org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source) > at > org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown > Source) > ... 101 more > Caused by: ERROR 22001: A truncation error was encountered trying to shrink > VARCHAR '{"type":"struct","fields":[{"name":"contributors","type":"st&' to > length 4000. > at org.apache.derby.iapi.error.StandardException.newException(Unknown > Source) > at org.apache.derby.iapi.types.SQLChar.hasNonBlankChars(Unknown Source) > at org.apache.derby.iapi.types.SQLVarchar.normalize(Unknown Source) > at org.apache.derby.iapi.types.SQLVarchar.normalize(Unknown Source) > at org.apache.derby.iapi.types.DataTypeDescriptor.normalize(Unknown > Source) > at > org.apache.derby.impl.sql.execute.NormalizeResultSet.normalizeColumn(Unknown > Source) > at > org.apache.derby.impl.sql.execute.NormalizeResultSet.normalizeRow(Unknown > Source) > at > org.apache.derby.impl.sql.execute.NormalizeResultSet.getNextRowCore(Unknown > Source) > at > org.apache.derby.impl.sql.execute.DMLWriteResultSet.getNextRowCore(Unknown > Source) > at org.apache.derby.impl.sql.execute.InsertResultSet.open(Unknown > Source) > at > org.apache.derby.impl.sql.GenericPreparedStatement.executeStmt(Unknown Source) > at org.apache.derby.impl.sql.GenericPreparedStatement.execute(Unknown > Source) > ... 95 more > {code} -- This message was sent by Atlassian JIRA (v6.3.4#6332) 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