Davies Liu created SPARK-6579:
---------------------------------
Summary: save as parquet with overwrite failed
Key: SPARK-6579
URL: https://issues.apache.org/jira/browse/SPARK-6579
Project: Spark
Issue Type: Bug
Components: SQL
Affects Versions: 1.3.0, 1.4.0
Reporter: Davies Liu
Assignee: Michael Armbrust
Priority: Critical
{code}
df = sc.parallelize(xrange(n), 4).map(lambda x: (x, str(x) *
2,)).toDF(['int', 'str'])
df.save("test_data", source="parquet", mode='overwrite')
df.save("test_data", source="parquet", mode='overwrite')
{code}
it failed with:
{code}
org.apache.spark.SparkException: Job aborted due to stage failure: Task 3 in
stage 3.0 failed 1 times, most recent failure: Lost task 3.0 in stage 3.0 (TID
6, localhost): java.lang.IllegalArgumentException: You cannot call toBytes()
more than once without calling reset()
at parquet.Preconditions.checkArgument(Preconditions.java:47)
at
parquet.column.values.rle.RunLengthBitPackingHybridEncoder.toBytes(RunLengthBitPackingHybridEncoder.java:254)
at
parquet.column.values.rle.RunLengthBitPackingHybridValuesWriter.getBytes(RunLengthBitPackingHybridValuesWriter.java:68)
at
parquet.column.impl.ColumnWriterImpl.writePage(ColumnWriterImpl.java:147)
at parquet.column.impl.ColumnWriterImpl.flush(ColumnWriterImpl.java:236)
at
parquet.column.impl.ColumnWriteStoreImpl.flush(ColumnWriteStoreImpl.java:113)
at
parquet.hadoop.InternalParquetRecordWriter.flushRowGroupToStore(InternalParquetRecordWriter.java:153)
at
parquet.hadoop.InternalParquetRecordWriter.close(InternalParquetRecordWriter.java:112)
at parquet.hadoop.ParquetRecordWriter.close(ParquetRecordWriter.java:73)
at
org.apache.spark.sql.parquet.ParquetRelation2.org$apache$spark$sql$parquet$ParquetRelation2$$writeShard$1(newParquet.scala:663)
at
org.apache.spark.sql.parquet.ParquetRelation2$$anonfun$insert$2.apply(newParquet.scala:677)
at
org.apache.spark.sql.parquet.ParquetRelation2$$anonfun$insert$2.apply(newParquet.scala:677)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:61)
at org.apache.spark.scheduler.Task.run(Task.scala:64)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:212)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
Driver stacktrace:
at
org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1211)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1200)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1199)
at
scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at
org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1199)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:693)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:693)
at scala.Option.foreach(Option.scala:236)
at
org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:693)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1399)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1360)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
{code}
run it again, it failed with:
{code}
15/03/27 13:26:16 WARN FSInputChecker: Problem opening checksum file:
file:/Users/davies/work/spark/tmp/test_data/_temporary/_attempt_201503271324_0011_r_000003_0/part-r-00004.parquet.
Ignoring exception: java.io.EOFException
at java.io.DataInputStream.readFully(DataInputStream.java:197)
at java.io.DataInputStream.readFully(DataInputStream.java:169)
at
org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSInputChecker.<init>(ChecksumFileSystem.java:134)
at
org.apache.hadoop.fs.ChecksumFileSystem.open(ChecksumFileSystem.java:283)
at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:427)
at
parquet.hadoop.ParquetFileReader.readFooter(ParquetFileReader.java:402)
at
org.apache.spark.sql.parquet.ParquetRelation2$MetadataCache$$anonfun$refresh$6.apply(newParquet.scala:295)
at
org.apache.spark.sql.parquet.ParquetRelation2$MetadataCache$$anonfun$refresh$6.apply(newParquet.scala:294)
at
scala.collection.parallel.mutable.ParArray$Map.leaf(ParArray.scala:658)
at
scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply$mcV$sp(Tasks.scala:54)
at
scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply(Tasks.scala:53)
at
scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply(Tasks.scala:53)
at scala.collection.parallel.Task$class.tryLeaf(Tasks.scala:56)
at
scala.collection.parallel.mutable.ParArray$Map.tryLeaf(ParArray.scala:650)
at
scala.collection.parallel.AdaptiveWorkStealingTasks$WrappedTask$class.compute(Tasks.scala:165)
at
scala.collection.parallel.AdaptiveWorkStealingForkJoinTasks$WrappedTask.compute(Tasks.scala:514)
at
scala.concurrent.forkjoin.RecursiveAction.exec(RecursiveAction.java:160)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at
scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at
scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at
scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
Traceback (most recent call last):
File "str.py", line 20, in <module>
gen()
File "str.py", line 12, in gen
df.save("test_data", source="parquet", mode='overwrite')
File "/Users/davies/work/spark/python/pyspark/sql/dataframe.py", line 215, in
save
self._jdf.save(source, jmode, joptions)
File "/Users/davies/work/spark/python/lib/py4j/java_gateway.py", line 538, in
__call__
self.target_id, self.name)
File "/Users/davies/work/spark/python/lib/py4j/protocol.py", line 300, in
get_return_value
format(target_id, '.', name), value)
py4j.protocol.Py4JJavaError: An error occurred while calling o66.save.
: scala.collection.parallel.CompositeThrowable: Multiple exceptions thrown
during a parallel computation: org.apache.hadoop.fs.ChecksumException: Checksum
error:
file:/Users/davies/work/spark/tmp/test_data/_temporary/_attempt_201503271324_0011_r_000000_0/part-r-00001.parquet
at 13237760
org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSInputChecker.readChunk(ChecksumFileSystem.java:219)
org.apache.hadoop.fs.FSInputChecker.readChecksumChunk(FSInputChecker.java:237)
org.apache.hadoop.fs.FSInputChecker.fill(FSInputChecker.java:176)
org.apache.hadoop.fs.FSInputChecker.read1(FSInputChecker.java:193)
org.apache.hadoop.fs.FSInputChecker.read(FSInputChecker.java:158)
org.apache.hadoop.fs.FSInputChecker.readFully(FSInputChecker.java:384)
org.apache.hadoop.fs.FSInputChecker.seek(FSInputChecker.java:365)
org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSInputChecker.seek(ChecksumFileSystem.java:271)
org.apache.hadoop.fs.FSDataInputStream.seek(FSDataInputStream.java:37)
parquet.hadoop.ParquetFileReader.readFooter(ParquetFileReader.java:413)
.
.
.
org.apache.hadoop.fs.ChecksumException: Checksum error:
file:/Users/davies/work/spark/tmp/test_data/_temporary/_attempt_201503271324_0011_r_000001_0/part-r-00002.parquet
at 13368832
org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSInputChecker.readChunk(ChecksumFileSystem.java:219)
org.apache.hadoop.fs.FSInputChecker.readChecksumChunk(FSInputChecker.java:237)
org.apache.hadoop.fs.FSInputChecker.fill(FSInputChecker.java:176)
org.apache.hadoop.fs.FSInputChecker.read1(FSInputChecker.java:193)
org.apache.hadoop.fs.FSInputChecker.read(FSInputChecker.java:158)
org.apache.hadoop.fs.FSInputChecker.readFully(FSInputChecker.java:384)
org.apache.hadoop.fs.FSInputChecker.seek(FSInputChecker.java:365)
org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSInputChecker.seek(ChecksumFileSystem.java:271)
org.apache.hadoop.fs.FSDataInputStream.seek(FSDataInputStream.java:37)
parquet.hadoop.ParquetFileReader.readFooter(ParquetFileReader.java:413)
.
.
.
org.apache.hadoop.fs.ChecksumException: Checksum error:
file:/Users/davies/work/spark/tmp/test_data/_temporary/_attempt_201503271324_0011_r_000002_0/part-r-00003.parquet
at 13565440
org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSInputChecker.readChunk(ChecksumFileSystem.java:219)
org.apache.hadoop.fs.FSInputChecker.readChecksumChunk(FSInputChecker.java:237)
org.apache.hadoop.fs.FSInputChecker.fill(FSInputChecker.java:176)
org.apache.hadoop.fs.FSInputChecker.read1(FSInputChecker.java:193)
org.apache.hadoop.fs.FSInputChecker.read(FSInputChecker.java:158)
org.apache.hadoop.fs.FSInputChecker.readFully(FSInputChecker.java:384)
org.apache.hadoop.fs.FSInputChecker.seek(FSInputChecker.java:365)
org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSInputChecker.seek(ChecksumFileSystem.java:271)
org.apache.hadoop.fs.FSDataInputStream.seek(FSDataInputStream.java:37)
parquet.hadoop.ParquetFileReader.readFooter(ParquetFileReader.java:413)
.
.
.
java.lang.RuntimeException:
file:/Users/davies/work/spark/tmp/test_data/_temporary/_attempt_201503271324_0011_r_000003_0/part-r-00004.parquet
is not a Parquet file (too small)
parquet.hadoop.ParquetFileReader.readFooter(ParquetFileReader.java:408)
org.apache.spark.sql.parquet.ParquetRelation2$MetadataCache$$anonfun$refresh$6.apply(newParquet.scala:295)
org.apache.spark.sql.parquet.ParquetRelation2$MetadataCache$$anonfun$refresh$6.apply(newParquet.scala:294)
scala.collection.parallel.mutable.ParArray$Map.leaf(ParArray.scala:658)
scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply$mcV$sp(Tasks.scala:54)
scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply(Tasks.scala:53)
scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply(Tasks.scala:53)
scala.collection.parallel.Task$class.tryLeaf(Tasks.scala:56)
scala.collection.parallel.mutable.ParArray$Map.tryLeaf(ParArray.scala:650)
scala.collection.parallel.AdaptiveWorkStealingTasks$WrappedTask$class.compute(Tasks.scala:165)
.
.
.
at scala.collection.parallel.package$$anon$1.alongWith(package.scala:85)
at scala.collection.parallel.Task$class.mergeThrowables(Tasks.scala:86)
at
scala.collection.parallel.mutable.ParArray$Map.mergeThrowables(ParArray.scala:650)
at scala.collection.parallel.Task$class.tryMerge(Tasks.scala:72)
at
scala.collection.parallel.mutable.ParArray$Map.tryMerge(ParArray.scala:650)
at
scala.collection.parallel.AdaptiveWorkStealingTasks$WrappedTask$class.internal(Tasks.scala:190)
at
scala.collection.parallel.AdaptiveWorkStealingForkJoinTasks$WrappedTask.internal(Tasks.scala:514)
at
scala.collection.parallel.AdaptiveWorkStealingTasks$WrappedTask$class.compute(Tasks.scala:162)
at
scala.collection.parallel.AdaptiveWorkStealingForkJoinTasks$WrappedTask.compute(Tasks.scala:514)
at
scala.concurrent.forkjoin.RecursiveAction.exec(RecursiveAction.java:160)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at
scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at
scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at
scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
{code}
It will success after delete the files.
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