[
https://issues.apache.org/jira/browse/SPARK-11191?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15003586#comment-15003586
]
Study Hsueh commented on SPARK-11191:
-------------------------------------
This is my exception stacktrace.
{code}
13:34:49,728 ERROR Schema:125 - Failed initialising database.
Unable to open a test connection to the given database. JDBC url =
jdbc:derby:;databaseName=metastore_db;create=true, username = APP. Terminating
connection pool (set lazyInit to true if you expect to start your database
after your app). Original Exception: ------
java.sql.SQLException: Failed to start database 'metastore_db' with class
loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1@4c8d45cf,
see the next exception for details.
at
org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.seeNextException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown
Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(Unknown Source)
at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.Driver20.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:208)
at com.jolbox.bonecp.BoneCP.obtainRawInternalConnection(BoneCP.java:361)
at com.jolbox.bonecp.BoneCP.<init>(BoneCP.java:416)
at
com.jolbox.bonecp.BoneCPDataSource.getConnection(BoneCPDataSource.java:120)
at
org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:501)
at
org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:298)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at
org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at
org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at
org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
at
org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
at
org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
at
org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at
org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at
org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at
org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at
org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at
org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at
org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234)
at
org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174)
at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166)
at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
at
org.apache.spark.sql.hive.client.ClientWrapper.<init>(ClientWrapper.scala:173)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at
org.apache.spark.sql.hive.client.IsolatedClientLoader.liftedTree1$1(IsolatedClientLoader.scala:183)
at
org.apache.spark.sql.hive.client.IsolatedClientLoader.<init>(IsolatedClientLoader.scala:179)
at
org.apache.spark.sql.hive.HiveContext.metadataHive$lzycompute(HiveContext.scala:226)
at
org.apache.spark.sql.hive.HiveContext.metadataHive(HiveContext.scala:185)
at
org.apache.spark.sql.hive.HiveContext.functionRegistry$lzycompute(HiveContext.scala:413)
at
org.apache.spark.sql.hive.HiveContext.functionRegistry(HiveContext.scala:412)
at org.apache.spark.sql.UDFRegistration.<init>(UDFRegistration.scala:40)
at org.apache.spark.sql.SQLContext.<init>(SQLContext.scala:296)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:72)
at
org.apache.spark.sql.hive.thriftserver.SparkSQLEnv$.init(SparkSQLEnv.scala:58)
at
org.apache.spark.sql.hive.thriftserver.HiveThriftServer2$.main(HiveThriftServer2.scala:77)
at
org.apache.spark.sql.hive.thriftserver.HiveThriftServer2.main(HiveThriftServer2.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:672)
at
org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:180)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:205)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:120)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.sql.SQLException: Failed to start database 'metastore_db' with
class loader
org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1@4c8d45cf, see the
next exception for details.
at
org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at
org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown
Source)
... 95 more
Caused by: java.sql.SQLException: Another instance of Derby may have already
booted the database
/usr/local/Cellar/apache-spark/1.5.1/libexec/sbin/metastore_db.
at
org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at
org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown
Source)
at
org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown
Source)
... 92 more
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the
database /usr/local/Cellar/apache-spark/1.5.1/libexec/sbin/metastore_db.
at org.apache.derby.iapi.error.StandardException.newException(Unknown
Source)
at
org.apache.derby.impl.store.raw.data.BaseDataFileFactory.privGetJBMSLockOnDB(Unknown
Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.run(Unknown
Source)
at java.security.AccessController.doPrivileged(Native Method)
at
org.apache.derby.impl.store.raw.data.BaseDataFileFactory.getJBMSLockOnDB(Unknown
Source)
at
org.apache.derby.impl.store.raw.data.BaseDataFileFactory.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown
Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
at
org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at
org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.store.raw.RawStore.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown
Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
at
org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at
org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.store.access.RAMAccessManager.boot(Unknown
Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown
Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
at
org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at
org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase.bootStore(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown
Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown
Source)
at
org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
at
org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(Unknown
Source)
at
org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(Unknown
Source)
at
org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(Unknown
Source)
at
org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Unknown
Source)
... 92 more
------
...
{code}
> [1.5] Can't create UDF's using hive thrift service
> --------------------------------------------------
>
> Key: SPARK-11191
> URL: https://issues.apache.org/jira/browse/SPARK-11191
> Project: Spark
> Issue Type: Bug
> Components: SQL
> Affects Versions: 1.5.0, 1.5.1
> Reporter: David Ross
> Assignee: Cheng Lian
> Priority: Blocker
> Fix For: 1.6.0
>
>
> Since upgrading to spark 1.5 we've been unable to create and use UDF's when
> we run in thrift server mode.
> Our setup:
> We start the thrift-server running against yarn in client mode, (we've also
> built our own spark from github branch-1.5 with the following args: {{-Pyarn
> -Phive -Phive-thrifeserver}}
> If i run the following after connecting via JDBC (in this case via beeline):
> {{add jar 'hdfs://path/to/jar"}}
> (this command succeeds with no errors)
> {{CREATE TEMPORARY FUNCTION testUDF AS 'com.foo.class.UDF';}}
> (this command succeeds with no errors)
> {{select testUDF(col1) from table1;}}
> I get the following error in the logs:
> {code}
> org.apache.spark.sql.AnalysisException: undefined function testUDF; line 1
> pos 8
> at
> org.apache.spark.sql.hive.HiveFunctionRegistry$$anonfun$lookupFunction$2$$anonfun$1.apply(hiveUDFs.scala:58)
> at
> org.apache.spark.sql.hive.HiveFunctionRegistry$$anonfun$lookupFunction$2$$anonfun$1.apply(hiveUDFs.scala:58)
> at scala.Option.getOrElse(Option.scala:120)
> at
> org.apache.spark.sql.hive.HiveFunctionRegistry$$anonfun$lookupFunction$2.apply(hiveUDFs.scala:57)
> at
> org.apache.spark.sql.hive.HiveFunctionRegistry$$anonfun$lookupFunction$2.apply(hiveUDFs.scala:53)
> at scala.util.Try.getOrElse(Try.scala:77)
> at
> org.apache.spark.sql.hive.HiveFunctionRegistry.lookupFunction(hiveUDFs.scala:53)
> at
> org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveFunctions$$anonfun$apply$10$$anonfun$applyOrElse$5$$anonfun$applyOrElse$24.apply(Analyzer.scala:506)
> at
> org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveFunctions$$anonfun$apply$10$$anonfun$applyOrElse$5$$anonfun$applyOrElse$24.apply(Analyzer.scala:506)
> at
> org.apache.spark.sql.catalyst.analysis.package$.withPosition(package.scala:48)
> at
> org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveFunctions$$anonfun$apply$10$$anonfun$applyOrElse$5.applyOrElse(Analyzer.scala:505)
> at
> org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveFunctions$$anonfun$apply$10$$anonfun$applyOrElse$5.applyOrElse(Analyzer.scala:502)
> at
> org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$3.apply(TreeNode.scala:227)
> at
> org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$3.apply(TreeNode.scala:227)
> at
> org.apache.spark.sql.catalyst.trees.CurrentOrigin$.withOrigin(TreeNode.scala:51)
> at
> org.apache.spark.sql.catalyst.trees.TreeNode.transformDown(TreeNode.scala:226)
> at
> org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$transformDown$1.apply(TreeNode.scala:232)
> at
> org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$transformDown$1.apply(TreeNode.scala:232)
> at
> org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$4.apply(TreeNode.scala:249)
> {code}
> (cutting the bulk for ease of report, more than happy to send the full output)
> {code}
> 15/10/12 14:34:37 ERROR SparkExecuteStatementOperation: Error running hive
> query:
> org.apache.hive.service.cli.HiveSQLException:
> org.apache.spark.sql.AnalysisException: undefined function testUDF; line 1
> pos 100
> at
> org.apache.spark.sql.hive.thriftserver.SparkExecuteStatementOperation.runInternal(SparkExecuteStatementOperation.scala:259)
> at
> org.apache.spark.sql.hive.thriftserver.SparkExecuteStatementOperation$$anon$1$$anon$2.run(SparkExecuteStatementOperation.scala:171)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:422)
> at
> org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1628)
> at
> org.apache.spark.sql.hive.thriftserver.SparkExecuteStatementOperation$$anon$1.run(SparkExecuteStatementOperation.scala:182)
> at
> java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
> at java.util.concurrent.FutureTask.run(FutureTask.java:266)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
> {code}
> When I ran the same against 1.4 it worked.
> I've also changed the {{spark.sql.hive.metastore.version}} version to be 0.13
> (similar to what it was in 1.4) and 0.14 but I still get the same errors.
> Also, in 1.5, when you run it against the {{spark-sql}} shell, it works.
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