On 21/08/2012 2:25, Sterling Rouse wrote:
When I create the document from scratch using a PdfWriter and its direct 
content, the sticky note displays properly on both the desktop and in iOS. 
However, when I use a PdfStamper and its direct over content to edit an 
existing PDF, the annotation is invisible on the desktop unless I manage to 
find it with my cursor and click on it. It doesn't appear to display at all on 
iOS, although it may simply be impossible to find it.

I've tried to reproduce your problem, and I didn't succeed.
I created a PDF with an annotation: annot_test.pdf
I used AnnotTest.java to add a large gray rectangle under the existing content and some text on top of the existing content. The result is annot-test.pdf

As expected, the annotation is still visible on top of the gray rectangle, and it even covers the text because an annotation isn't part of the content: it's something that is added on top over everything.

You'll have to provide the code you wrote to create the annotation as well as the code that uses PdfStamper if you want help on the mailing-list.
<<< text/html; name="annot_test.pdf": Unrecognized >>>

<<< text/html; name="annot-test.pdf": Unrecognized >>>
package examples.stamper;

import java.io.FileOutputStream;
import java.io.IOException;

import com.itextpdf.text.BaseColor;
import com.itextpdf.text.DocumentException;
import com.itextpdf.text.Element;
import com.itextpdf.text.Phrase;
import com.itextpdf.text.pdf.ColumnText;
import com.itextpdf.text.pdf.PdfContentByte;
import com.itextpdf.text.pdf.PdfReader;
import com.itextpdf.text.pdf.PdfStamper;

public class AnnotTest {

        public static void main(String[] args) throws IOException, 
DocumentException {
                PdfReader reader = new PdfReader("resources/annot_test.pdf");
                PdfStamper stamper = new PdfStamper(reader, new 
FileOutputStream("results/annot-test.pdf"));
                PdfContentByte cb1 = stamper.getUnderContent(1);
                PdfContentByte cb2 = stamper.getOverContent(1);
                cb1.setColorFill(BaseColor.GRAY);
                cb1.rectangle(0, 0, 595, 842);
                cb1.fill();
                ColumnText.showTextAligned(cb2, Element.ALIGN_LEFT, new 
Phrase("TESTING"), 200, 700, 45);
                stamper.close();
        }
}
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