Some time back I experimented a little with biber -- a bibtex 
replacement which supports encoding formats, auto-expansion and 
contraction of names and namelists, and other features 
<http://biblatex-biber.sourceforge.net/>

If you do go and experiment with this, please report back your 
findings.

the following link might provide a starting point for the workflows 
that Aradenatorix alluded to:

<http://tex.stackexchange.com/questions/23942/bibliography-tools-that-are-compatible-with-biblatex-and-biber>

hope that helps.

   EBo --

On Mar 28 2015 9:03 PM, Aradenatorix Veckhom Vacelaevus wrote:
> Could you detail what is exactly the issue? Be careful to use the 
> same
> codification in all your files in LaTeX. For me is easier to use
> always UTF8 (but not utf8x). With JabRef I setup the same encoding by
> default. But be aware that bibtex uses ascii but not utf8. here is a
> compiler a kind of extension of bibtex that recognizes utf8. Since I
> use LaTeX I don't need to use the old ascii  tricks in my databases
> within JabRef, but it depends of the workflow you use.
>
> Luck.

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