In my example, adding a flush between the merge and refresh seems to help a 
lot.  


  |         group = new Group();
  |         group.setGroupname( newGroupname() );
  |         orgmobDatabase.persist( group );
  |         // User owns the bidirectional many-to-many relationship with Group
  |         user.getGroups().add( group );
  |         orgmobDatabase.merge( user );
  |         orgmobDatabase.flush();
  |         orgmobDatabase.refresh( group );

Also, after some more reading persistence type PERSIST also seems more 
appropriate to my needs.

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