Yes, you are missing something - download a JDK from the Sun web site: 
java.sun.com.  The libgcj JDK is inadequate for running any serious Java apps.

Using apt, you can search for and get the Sun JRE fro the repository. But I am 
not sure if the IDE bundle will be happy with just a JRE.

You could also look into downloading the OpenJDK (if you are running Ubuntu 
8.04), it might do the job also (not sure of the package name).

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