Found it. It looks like it's the SerializableDeploymentRepository which does 
this:


protected VFSDeployment removeApplication(String vfsPath) throws Exception
  |    {
  |       VFSDeployment vfsDeployment = getApplication(vfsPath);
  |       VirtualFile root = vfsDeployment.getRoot();
  |       if(root.delete() == false)
  |          throw new IOException("Failed to delete: " + root);
  | 
  |       return this.applicationCtxs.remove(vfsPath);
  |    }

Not sure why the application needs to be physically deleted.


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