Peter, thank you very much for your help.

I found the file as per your instructions. In the JMX MBean View, I found what 
you described. I'll try remove that file and try again with the mysql-ds.xml in 
the deploy dir as before.

One more question: So is this normal for JBoss to pick up the file 
/usr/local/jboss-4.0.2/server/default/deploy/mysql-ds.xml, register Mbeans for 
it automatically and copy the file to 
/usr/local/jboss-4.0.2/server/default/deploy/jboss-hibernate.deployer/mysql-ds.xml?
  It seems it should not do that, because then the server complains on the next 
restart. I am just trying to see what I can do prevent such a situation from 
arising again.

JMX MBean View:

  | ...  
  | watch: 
file:/usr/local/jboss-4.0.2/server/default/deploy/jboss-hibernate.deployer/mysql-ds.xml
  |   altDD: null
  |   lastDeployed: 1148673053342
  |   lastModified: 1148673048000
  |   mbeans:
  |     jboss.jca:service=LocalTxCM,name=jdbc/dna_ds state: Started
  |     jboss.jca:service=ManagedConnectionPool,name=jdbc/dna_ds state: Started
  |     jboss.jca:service=ManagedConnectionFactory,name=jdbc/dna_ds state: 
Started
  |     jboss.jca:service=DataSourceBinding,name=jdbc/dna_ds state: Started
  |     jboss.jdbc:service=metadata,datasource=jdbc/dna_ds state: Started
  | ...
  | 
  | 

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