I got the following exception using TDB-0.8.11-SNAPSHOT
[java] com.hp.hpl.jena.tdb.base.file.FileException: ObjectFile.read:
Failed to read the object (795372659 bytes) : got 106 bytes
[java] at
com.hp.hpl.jena.tdb.base.objectfile.ObjectFileDiskDirect.read(ObjectFileDiskDirect.java:182)
[java] at com.hp.hpl.jena.tdb.lib.NodeLib.fetchDecode(NodeLib.java:70)
[java] at
com.hp.hpl.jena.tdb.nodetable.NodeTableNative.readNodeByNodeId(NodeTableNative.java:158)
[java] at
com.hp.hpl.jena.tdb.nodetable.NodeTableNative._retrieveNodeByNodeId(NodeTableNative.java:85)
[java] at
com.hp.hpl.jena.tdb.nodetable.NodeTableNative.getNodeForNodeId(NodeTableNative.java:58)
[java] at
com.hp.hpl.jena.tdb.nodetable.NodeTableWrapper.getNodeForNodeId(NodeTableWrapper.java:44)
[java] at
com.hp.hpl.jena.tdb.nodetable.NodeTableInline.getNodeForNodeId(NodeTableInline.java:55)
[java] at com.hp.hpl.jena.tdb.lib.TupleLib.tupleNodes(TupleLib.java:86)
[java] at com.hp.hpl.jena.tdb.lib.TupleLib$1.convert(TupleLib.java:40)
[java] at com.hp.hpl.jena.tdb.lib.TupleLib$1.convert(TupleLib.java:36)
[java] at org.openjena.atlas.iterator.Iter$4.next(Iter.java:268)
[java] at
com.hp.hpl.jena.tdb.sys.ConcurrencyPolicyMRSW$IteratorCheckNotConcurrent.next(ConcurrencyPolicyMRSW.java:113)
[java] at
com.hp.hpl.jena.tdb.store.DatasetPrefixesTDB.readPrefixMap(DatasetPrefixesTDB.java:157)
[java] at
com.hp.hpl.jena.sparql.graph.GraphPrefixesProjection.getNsPrefixMap(GraphPrefixesProjection.java:51)
[java] at
com.hp.hpl.jena.tdb.store.DatasetPrefixesTDB.getPrefixMapping(DatasetPrefixesTDB.java:207)
[java] at
com.hp.hpl.jena.tdb.store.GraphNamedTDB.createPrefixMapping(GraphNamedTDB.java:65)
[java] at
com.hp.hpl.jena.sparql.graph.GraphBase2.getPrefixMapping(GraphBase2.java:172)
[java] at
com.hp.hpl.jena.rdf.model.impl.ModelCom.getPrefixMapping(ModelCom.java:769)
[java] at
com.hp.hpl.jena.rdf.model.impl.ModelCom.withDefaultMappings(ModelCom.java:806)
[java] at
com.hp.hpl.jena.rdf.model.impl.ModelCom.<init>(ModelCom.java:54)
[java] at
com.hp.hpl.jena.rdf.model.impl.ModelCom.<init>(ModelCom.java:50)
[java] at
com.hp.hpl.jena.rdf.model.ModelFactory.createModelForGraph(ModelFactory.java:146)
[java] at
com.hp.hpl.jena.sparql.core.DatasetImpl.graph2model(DatasetImpl.java:113)
[java] at
com.hp.hpl.jena.sparql.core.DatasetImpl.getNamedModel(DatasetImpl.java:75)
[java] at
com.hp.hpl.jena.tdb.assembler.TDBGraphAssembler.open(TDBGraphAssembler.java:81)
[java] at
com.hp.hpl.jena.tdb.assembler.TDBGraphAssembler.open(TDBGraphAssembler.java:29)
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerGroup$PlainAssemblerGroup.openBySpecificType(AssemblerGroup.java:118)
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerGroup$PlainAssemblerGroup.open(AssemblerGroup.java:105)
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerGroup$ExpandingAssemblerGroup.open(AssemblerGroup.java:69)
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerBase.open(AssemblerBase.java:37)
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerBase.open(AssemblerBase.java:34)
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerGroup.openModel(AssemblerGroup.java:23)
[java] at
com.sas.hls.hoa.ontology.Database.getICD9inferredModel(Database.java:28)
[java] at
com.sas.hls.hoa.ontology.LoadPatientDiagnosis.main(LoadPatientDiagnosis.java:31)
[java] Exception in thread "main"
com.hp.hpl.jena.assembler.exceptions.AssemblerException: caught:
ObjectFile.read: Failed to read the object (795372659 bytes) : got 106 bytes
[java] doing:
[java] root: http://www.sas.com/hls/hoa#ICD9_inferred with type:
http://jena.hpl.hp.com/2008/tdb#GraphTDB assembler class: class
com.hp.hpl.jena.tdb.assembler.TDBGraphAssembler
[java]
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerGroup$PlainAssemblerGroup.openBySpecificType(AssemblerGroup.java:126)
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerGroup$PlainAssemblerGroup.open(AssemblerGroup.java:105)
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerGroup$ExpandingAssemblerGroup.open(AssemblerGroup.java:69)
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerBase.open(AssemblerBase.java:37)
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerBase.open(AssemblerBase.java:34)
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerGroup.openModel(AssemblerGroup.java:23)
[java] at
com.sas.hls.hoa.ontology.Database.getICD9inferredModel(Database.java:28)
[java] at
com.sas.hls.hoa.ontology.LoadPatientDiagnosis.main(LoadPatientDiagnosis.java:31)
[java] Caused by: com.hp.hpl.jena.tdb.base.file.FileException:
ObjectFile.read: Failed to read the object (795372659 bytes) : got 106 bytes
[java] at
com.hp.hpl.jena.tdb.base.objectfile.ObjectFileDiskDirect.read(ObjectFileDiskDirect.java:182)
[java] at com.hp.hpl.jena.tdb.lib.NodeLib.fetchDecode(NodeLib.java:70)
[java] at
com.hp.hpl.jena.tdb.nodetable.NodeTableNative.readNodeByNodeId(NodeTableNative.java:158)
[java] at
com.hp.hpl.jena.tdb.nodetable.NodeTableNative._retrieveNodeByNodeId(NodeTableNative.java:85)
[java] at
com.hp.hpl.jena.tdb.nodetable.NodeTableNative.getNodeForNodeId(NodeTableNative.java:58)
[java] at
com.hp.hpl.jena.tdb.nodetable.NodeTableWrapper.getNodeForNodeId(NodeTableWrapper.java:44)
[java] at
com.hp.hpl.jena.tdb.nodetable.NodeTableInline.getNodeForNodeId(NodeTableInline.java:55)
[java] at com.hp.hpl.jena.tdb.lib.TupleLib.tupleNodes(TupleLib.java:86)
[java] at com.hp.hpl.jena.tdb.lib.TupleLib$1.convert(TupleLib.java:40)
[java] at com.hp.hpl.jena.tdb.lib.TupleLib$1.convert(TupleLib.java:36)
[java] at org.openjena.atlas.iterator.Iter$4.next(Iter.java:268)
[java] at
com.hp.hpl.jena.tdb.sys.ConcurrencyPolicyMRSW$IteratorCheckNotConcurrent.next(ConcurrencyPolicyMRSW.java:113)
[java] at
com.hp.hpl.jena.tdb.store.DatasetPrefixesTDB.readPrefixMap(DatasetPrefixesTDB.java:157)
[java] at
com.hp.hpl.jena.sparql.graph.GraphPrefixesProjection.getNsPrefixMap(GraphPrefixesProjection.java:51)
[java] at
com.hp.hpl.jena.tdb.store.DatasetPrefixesTDB.getPrefixMapping(DatasetPrefixesTDB.java:207)
[java] at
com.hp.hpl.jena.tdb.store.GraphNamedTDB.createPrefixMapping(GraphNamedTDB.java:65)
[java] at
com.hp.hpl.jena.sparql.graph.GraphBase2.getPrefixMapping(GraphBase2.java:172)
[java] at
com.hp.hpl.jena.rdf.model.impl.ModelCom.getPrefixMapping(ModelCom.java:769)
[java] at
com.hp.hpl.jena.rdf.model.impl.ModelCom.withDefaultMappings(ModelCom.java:806)
[java] at
com.hp.hpl.jena.rdf.model.impl.ModelCom.<init>(ModelCom.java:54)
[java] at
com.hp.hpl.jena.rdf.model.impl.ModelCom.<init>(ModelCom.java:50)
[java] at
com.hp.hpl.jena.rdf.model.ModelFactory.createModelForGraph(ModelFactory.java:146)
[java] at
com.hp.hpl.jena.sparql.core.DatasetImpl.graph2model(DatasetImpl.java:113)
[java] at
com.hp.hpl.jena.sparql.core.DatasetImpl.getNamedModel(DatasetImpl.java:75)
[java] at
com.hp.hpl.jena.tdb.assembler.TDBGraphAssembler.open(TDBGraphAssembler.java:81)
[java] at
com.hp.hpl.jena.tdb.assembler.TDBGraphAssembler.open(TDBGraphAssembler.java:29)
[java] at
com.hp.hpl.jena.assembler.assemblers.AssemblerGroup$PlainAssemblerGroup.openBySpecificType(AssemblerGroup.java:118)
[java] ... 7 more
[java] Java Result: 1
David Jordan
Software Developer
SAS Institute Inc.
Health & Life Sciences, Research & Development
Bldg R ▪ Office 4467
600 Research Drive ▪ Cary, NC 27513
Tel: 919 531 1233 ▪ [email protected]<mailto:[email protected]>
www.sas.com<http://www.sas.com>
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