Daniel,
I should have been more specific.  Recently someone un-installed the gradle
plugin from one of our masters.  The gradle build step was removed from
every job configuration.  I think experience will vary depending on the
plugin implementation.
I have also seen the situation you describe where Jenkins warns that old
data exists.

On Wed, Feb 17, 2016 at 8:25 PM Daniel Beck <m...@beckweb.net> wrote:

>
> On 16.02.2016, at 01:48, gsimpson via Jenkins Developers <
> jenkinsci-dev@googlegroups.com> wrote:
>
> > If you uninstall the plugin you will lose your configuration
>
> Not true in general, the data is just not loadable. Only when you re-save
> affected objects (e.g. jobs) is the unloadable data in the files discarded.
> You can see this in Manage Jenkins ยป Manage Old Data.
>
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