We are seeing the same issue after updating to 1.40. The job fails. This is the output:

AssertionError: appears to be using unpatched svnkit at file:/tmp/hudson-remoting6567098393035999821/org/tmatesoft/svn/core/wc/SVNEvent.class
At revision 5215
AssertionError: appears to be using unpatched svnkit at file:/tmp/hudson-remoting6567098393035999821/org/tmatesoft/svn/core/wc/SVNEvent.class
FATAL: hudson.remoting.RequestAbortedException: java.io.StreamCorruptedException: invalid type code: 41
hudson.remoting.RequestAbortedException: hudson.remoting.RequestAbortedException: java.io.StreamCorruptedException: invalid type code: 41
	at hudson.remoting.Request.call(Request.java:149)
	at hudson.remoting.Channel.call(Channel.java:646)
	at hudson.FilePath.act(FilePath.java:821)
	at hudson.FilePath.act(FilePath.java:814)
	at hudson.scm.SubversionSCM.checkout(SubversionSCM.java:743)
	at hudson.scm.SubversionSCM.checkout(SubversionSCM.java:685)
	at hudson.model.AbstractProject.checkout(AbstractProject.java:1218)
	at hudson.model.AbstractBuild$AbstractRunner.checkout(AbstractBuild.java:581)
	at hudson.model.AbstractBuild$AbstractRunner.run(AbstractBuild.java:470)
	at hudson.model.Run.run(Run.java:1434)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
	at hudson.model.ResourceController.execute(ResourceController.java:88)
	at hudson.model.Executor.run(Executor.java:239)
Caused by: hudson.remoting.RequestAbortedException: java.io.StreamCorruptedException: invalid type code: 41
	at hudson.remoting.Request.abort(Request.java:273)
	at hudson.remoting.Channel.terminate(Channel.java:702)
	at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:69)
Caused by: java.io.StreamCorruptedException: invalid type code: 41
	at java.io.ObjectInputStream.readObject0(Unknown Source)
	at java.io.ObjectInputStream.readObject(Unknown Source)
	at hudson.remoting.Command.readFrom(Command.java:90)
	at hudson.remoting.ClassicCommandTransport.read(ClassicCommandTransport.java:59)
	at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:48)
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