The problem is that these workspaces were not in version control, since they only contain some scripts that never change. From time to time I back them up - and normally our company always does backups - but it still deleted some valuable items.
I think this is still a serious issue since Jenkins allows workspaces without version control association, and therefore they will not be automatically re-created.
Also, I have custom workspaces pointing into directories of my current development environment to run some scripts easily.
Deleting them would delete ongoing development work. And yes, sometimes a specific branch might be dormant for a while...

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