I'm seeing this as well, suspect it relates to lazy project loading. Here's an example log (7.1patch142_platform_rails):
Notifying upstream build 7.1patch142_platform #9 of job completion
Project 7.1patch142_platform still waiting for [7.1patch142_platform_DataServices, 7.1patch142_platform_katrina, 7.1patch142_platform_flex-components, 7.1patch142_platform_authentication, 7.1patch142_platform_bAware, 7.1patch142_platform_cicada, 7.1patch142_platform_DPServer, 7.1patch142_platform_elibs, 7.1patch142_platform_ebins, 7.1patch142_platform_sdks, 7.1patch142_platform_HSQLDefrag, 7.1patch142_platform_service-wrapper, 7.1patch142_platform_bSecurity, 7.1patch142_platform_adforest] builds to complete
Notifying upstream projects of job completion
Notifying upstream of completion: 7.1patch142_platform #9
Finished: SUCCESS

Note that at the time of this project's completion, all of the jobs listed as being waited for have already completed, and have similar logs.

Here's 7.1patch142_platform_elibs from above:
Notifying upstream build 7.1patch142_platform #9 of job completion
Project 7.1patch142_platform still waiting for [7.1patch142_platform_DataServices, 7.1patch142_platform_rails, 7.1patch142_platform_bAware, 7.1patch142_platform_cicada] builds to complete
Notifying upstream projects of job completion
Notifying upstream of completion: 7.1patch142_platform #9
Finished: SUCCESS

Clearly, in between these projects building, 7.1patch142_platform #9 forgot about projects that it already knew had been completed. The time between those projects completing is ~6 hours.

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