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There also is something fishy going on with the clean.
I've now worked around this specific problem by deleting the git directory after the build.
But now the clean fails to remove the 'dist' directory is use in a
make DESTDIR="$(pwd)/dist" install
It shouldn't fail this.
And actually if I start a build right after, it successfully removes the dist directory
log 1:
Started by user Ferry Huberts
Building in workspace /var/lib/jenkins/workspace/cgit_upstream_get-git_master
Checkout:cgit_upstream_get-git_master / /var/lib/jenkins/workspace/cgit_upstream_get-git_master - hudson.remoting.LocalChannel@77ed71cb
Using strategy: Default
Last Built Revision: Revision e1e0e038fd0fee3fe10524d7466deab03e78deb5 (origin/master)
Fetching changes from 1 remote Git repository
Pruning obsolete local branches
Commencing build of Revision b60e6bff75719a5fb0df970bac3be6b2726cf73a (origin/master)
Checking out Revision b60e6bff75719a5fb0df970bac3be6b2726cf73a (origin/master)
Cleaning workspace
FATAL: org.eclipse.jgit.api.errors.CheckoutConflictException: Checkout conflict with file: Cannot delete file: git/.depend
hudson.plugins.git.GitException: org.eclipse.jgit.api.errors.CheckoutConflictException: Checkout conflict with file: Cannot delete file: git/.depend
at org.jenkinsci.plugins.gitclient.JGitAPIImpl.clean(JGitAPIImpl.java:310)
at hudson.plugins.git.GitAPI.clean(GitAPI.java:248)
at hudson.plugins.git.GitSCM$4.invoke(GitSCM.java:1213)
at hudson.plugins.git.GitSCM$4.invoke(GitSCM.java:1196)
at hudson.FilePath.act(FilePath.java:865)
at hudson.FilePath.act(FilePath.java:838)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1196)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1364)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:670)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:88)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:575)
at hudson.model.Run.execute(Run.java:1575)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:237)
Caused by: org.eclipse.jgit.api.errors.CheckoutConflictException: Checkout conflict with file: Cannot delete file: git/.depend
at org.eclipse.jgit.api.ResetCommand.checkoutIndex(ResetCommand.java:361)
at org.eclipse.jgit.api.ResetCommand.call(ResetCommand.java:204)
at org.jenkinsci.plugins.gitclient.JGitAPIImpl.clean(JGitAPIImpl.java:304)
... 14 more
Caused by: org.eclipse.jgit.errors.CheckoutConflictException: Checkout conflict with file: Cannot delete file: git/.depend
at org.eclipse.jgit.dircache.DirCacheCheckout.cleanUpConflicts(DirCacheCheckout.java:873)
at org.eclipse.jgit.dircache.DirCacheCheckout.doCheckout(DirCacheCheckout.java:413)
at org.eclipse.jgit.dircache.DirCacheCheckout.checkout(DirCacheCheckout.java:391)
at org.eclipse.jgit.api.ResetCommand.checkoutIndex(ResetCommand.java:359)
... 16 more
log 2:
normal successful build