I did some digging in the code. The introduction of the timeout corresponds to:

commit 1b7fd2b18d626d8ca081933d8a004fd7b2279210
Author: Nicolas De Loof <nicolas.del...@gmail.com> 2013-10-28 04:23:58
Committer: Nicolas De Loof <nicolas.del...@gmail.com> 2013-10-28 04:23:58
Parent: ddfde14d27aa6cd802dfc9897506eae4095b4f37 (JENKINS-20189 automatically append .git to repo URL just as git-cli does when base URL don't resolve to a git repo)
Child: 8512c51b116475e78b1c1ddd7c84277af0f64904 ([FIXED JENKINS-20326] proxy may not require authentication)
Branches: origin/1.4.x, origin/gitcredentials

If you look into the code, it is designed to be configurable by a system property. Kjell Morgenstern mentioned that didn't work, but it's because the system property was misspelt in his example. The O in timeOut is capitalized.

should be
java -Dorg.jenkinsci.plugins.gitclient.Git.timeOut=12000 -jar jenkins.war

Also, it's in minutes, not seconds.

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