correction, the steps to incrementally change Packages.gz for each new version are the following:
1. create an addition for a new version:

sudo dpkg-scanpackages . /dev/null | gzip -9 > Packages.add

2.concatenate Packages.gz and the new version:

zcat /debian/binary/Packages.gz | cat - Packages.add | zgip -9 > /debian/binary/Packages.gz

Please let me know if I can help fixing it, need that fix asap.

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