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Since you report it is a random failure, and it seems to be Windows specific, you might also try to accelerate the frequency at which you encounter the problem by defining multiple jobs which use the same ssh authenticated repository, with a local reference repository (to reduce the cloning data transfer), then run the jobs concurrently.
If the problem is a file locking problem with the C:\Users\Administrator\.ssh directory, or with a file in that directory, then running many jobs in parallel should make it happen much more often, and may give you a chance to see other hints which may suggest what is causing the locking problem.