I just hit this same problem with one of my projects. Something else I discovered that is worth considering is that it appears that when you call pylint code directly from other scripts, the --msg-template parameter seems to be ignored. I'm not sure if this is a defect in the library itself or maybe my use of the library atm. If it is a defect with the pylint code I'll report a bug with them, but in the meantime if you choose to document the expected output format as part of your parser plugin rather than create a new parser (which does seem preferable), you may want to mention this tidbit.

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