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I wonder if that hints the polling has started but not completed? The calls to command line git from the git plugin attempt to never have the command line git block, but there seem to be more ways to block than there are techniques to prevent blocking.
You could check the polling log of the jobs to see if the polling is in progress. Alternately, you could check the processes on the master server to see if there are many git processes running which have existed for a long time.