[
https://issues.apache.org/jira/browse/ARROW-9237?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Stuart Russell updated ARROW-9237:
----------------------------------
Description:
As per the installation vignette I'm reporting this installation issue.
I couldn't install the R package by building the C++ libraries as I hit:
{code:r}
# arch arrow install unable to load shared object
R/x86_64-pc-linux-gnu-library/4.0/00LOCK-arrow/00new/arrow/libs/arrow.so :
undefined symbol: _ZTIN6apache6thrift8protocol9TProtocolE{code}
I tried to set R_LD_LIBRARY_PATH as suggested but it didn't help. Maybe I made
a mistake.
Using a prebuild arrow binary was failing as the version on the Arch AUR was
0.17.0 while the CRAN was wanting 0.17.1, and the even the AUR 0.17.0 install
was failing because there are apparently issues with grpc 1.28+ (I was on
1.29.1) according to .
I finally solved the issue by setting -DARROW_FLIGHT to OFF during installation
from the AUR ( I also turned -DARROW_WITH_SNAPPY to ON):
{code:bash}
yay --editmenu -S arrow
{code}
Then to install the R package I had to set NOT_CRAN=true & install the 0.17.0
version:
{code:r}
Sys.setenv("NOT_CRAN"="true")
packageurl <-
"http://cran.r-project.org/src/contrib/Archive/arrow/arrow_0.17.0.tar.gz";
install.packages(packageurl, repos=NULL, type="source")
{code}
This led to a working R install, but I never solved my issue compiling the C++
binaries during R install. Perhaps this relates to the same issue with grpc?
I'm sorry I didn't save all the error messages I hit, but I've included a
working PKGBUILD for my system, edited from
[https://aur.archlinux.org/packages/arrow/]. I hope it helps.
was:
As per the installation vignette I'm reporting this installation issue.
I couldn't install the R package by building the C++ libraries as I hit:
{code:r}
# arch arrow install unable to load shared object
R/x86_64-pc-linux-gnu-library/4.0/00LOCK-arrow/00new/arrow/libs/arrow.so :
undefined symbol: _ZTIN6apache6thrift8protocol9TProtocolE{code}
I tried to set R_LD_LIBRARY_PATH as suggested but it didn't help. Maybe I made
a mistake.
Using a prebuild arrow binary was failing as the version on the Arch AUR was
0.17.0 while the CRAN was wanting 0.17.1, and the even the AUR 0.17.0 install
was failing because there are apparently issues with grpc 1.28+ (I was on
1.29.1).
I finally solved the issue by setting -DARROW_FLIGHT to OFF during installation
from the AUR ( I also turned -DARROW_WITH_SNAPPY to ON):
{code:bash}
yay --editmenu -S arrow
{code}
Then to install the R package I had to set NOT_CRAN=true & install the 0.17.0
version:
{code:r}
Sys.setenv("NOT_CRAN"="true")
packageurl <-
"http://cran.r-project.org/src/contrib/Archive/arrow/arrow_0.17.0.tar.gz";
install.packages(packageurl, repos=NULL, type="source")
{code}
This led to a working R install, but I never solved my issue compiling the C++
binaries during R install. Perhaps this relates to the same issue with grpc?
I'm sorry I didn't save all the error messages I hit, but I've included a
working PKGBUILD for my system, edited from
[https://aur.archlinux.org/packages/arrow/]. I hope it helps.
> [R] 0.17 install on Arch Linux
> ------------------------------
>
> Key: ARROW-9237
> URL: https://issues.apache.org/jira/browse/ARROW-9237
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Affects Versions: 0.17.1
> Environment: LSB Version: 1.4,
> Distributor ID: Arch,
> Description: Arch Linux,
> Release: rolling,
> (fully updated)
> Binaries:
> aur/arrow 0.17.0-1 - https://aur.archlinux.org/packages/arrow/
> community/grpc 1.29.1-1 -
> https://www.archlinux.org/packages/community/x86_64/grpc/
> R Cran arrow 0.17.1
> Reporter: Stuart Russell
> Priority: Major
> Labels: Linux, R, install
> Attachments: PKGBUILD
>
>
> As per the installation vignette I'm reporting this installation issue.
> I couldn't install the R package by building the C++ libraries as I hit:
> {code:r}
> # arch arrow install unable to load shared object
> R/x86_64-pc-linux-gnu-library/4.0/00LOCK-arrow/00new/arrow/libs/arrow.so :
> undefined symbol: _ZTIN6apache6thrift8protocol9TProtocolE{code}
> I tried to set R_LD_LIBRARY_PATH as suggested but it didn't help. Maybe I
> made a mistake.
> Using a prebuild arrow binary was failing as the version on the Arch AUR was
> 0.17.0 while the CRAN was wanting 0.17.1, and the even the AUR 0.17.0 install
> was failing because there are apparently issues with grpc 1.28+ (I was on
> 1.29.1) according to .
> I finally solved the issue by setting -DARROW_FLIGHT to OFF during
> installation from the AUR ( I also turned -DARROW_WITH_SNAPPY to ON):
> {code:bash}
> yay --editmenu -S arrow
> {code}
> Then to install the R package I had to set NOT_CRAN=true & install the 0.17.0
> version:
> {code:r}
> Sys.setenv("NOT_CRAN"="true")
> packageurl <-
> "http://cran.r-project.org/src/contrib/Archive/arrow/arrow_0.17.0.tar.gz";
> install.packages(packageurl, repos=NULL, type="source")
> {code}
> This led to a working R install, but I never solved my issue compiling the
> C++ binaries during R install. Perhaps this relates to the same issue with
> grpc?
> I'm sorry I didn't save all the error messages I hit, but I've included a
> working PKGBUILD for my system, edited from
> [https://aur.archlinux.org/packages/arrow/]. I hope it helps.
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