[
https://issues.apache.org/jira/browse/ARROW-9857?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Uwe Korn updated ARROW-9857:
----------------------------
Summary: [R] Failed to install Arrow 0.14.1 (was: Failed to install Arrow
0.14.1)
> [R] Failed to install Arrow 0.14.1
> ----------------------------------
>
> Key: ARROW-9857
> URL: https://issues.apache.org/jira/browse/ARROW-9857
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Affects Versions: 0.14.1
> Reporter: SHOBHIT SHUKLA
> Priority: Major
>
> We are seeing issue to install arrow R package on RHEL machines. Using below
> command to install arrow.
> *R -e "install.packages(\"remotes\",repos =
> \"http://cran.r-project.org\";);remotes::install_github(\"apache/arrow\",
> subdir = \"r\", ref = \"apache-arrow-0.14.1\")"*
> *Error logs :*
> The downloaded source packages are in
> '/tmp/Rtmpycmy4e/downloaded_packages'
> [0m[91mUpdating HTML index of packages in '.Library'
> [0m[91mMaking 'packages.html' ...[0m[91m done
> [0m[91mRunning `R CMD build`...
> [0m* checking for file
> '/tmp/Rtmpycmy4e/remotesa23015b2/apache-arrow-8d09de2/r/DESCRIPTION' ... OK
> * preparing 'arrow':
> * checking DESCRIPTION meta-information ... OK
> * cleaning src
> * running 'cleanup'
> * checking for LF line-endings in source and make files and shell scripts
> * checking for empty or unneeded directories
> * building 'arrow_0.14.1.tar.gz'
> [91m* installing *source* package 'arrow' ...
> [0m[91m** using staged installation
> [0m$ pkg-config --cflags --silence-errors arrow parquet
> PKGCONFIG_CFLAGS = "-DNDEBUG "
> $ pkg-config --libs arrow parquet
> PKGCONFIG_LIBS = "-lparquet -larrow "
> Found pkg-config cflags and libs!
> PKG_CFLAGS=-DNDEBUG -DARROW_R_WITH_ARROW
> PKG_LIBS=-lparquet -larrow
> [91m** libs
> [0mg++ -std=gnu++11 -I"/opt/ibm/conda/R/lib64/R/include" -DNDEBUG -DNDEBUG
> -DARROW_R_WITH_ARROW -I"/opt/ibm/conda/R/lib64/R/library/Rcpp/include"
> -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c array.cpp -o
> array.o
> [91mIn file included from
> /opt/ibm/conda/R/lib64/R/library/Rcpp/include/Rcpp/macros/macros.h:134:0,
> from
> /opt/ibm/conda/R/lib64/R/library/Rcpp/include/Rcpp/r/headers.h:69,
> from
> /opt/ibm/conda/R/lib64/R/library/Rcpp/include/RcppCommon.h:29,
> from ./arrow_types.h:24,
> from array.cpp:18:
> ./arrow_types.h:188:26: error: 'Type' is not a member of 'arrow::ipc::Message'
> RCPP_EXPOSED_ENUM_NODECL(arrow::ipc::Message::Type)
> ^
> /opt/ibm/conda/R/lib64/R/library/Rcpp/include/Rcpp/macros/module.h:76:106:
> note: in definition of macro 'RCPP_EXPOSED_ENUM_AS'
> #define RCPP_EXPOSED_ENUM_AS(CLASS) namespace Rcpp{ namespace traits{
> template<> struct r_type_traits< CLASS >{ typedef r_type_enum_tag r_category
> ; } ; }}
>
> ^
> ./arrow_types.h:188:1: note: in expansion of macro 'RCPP_EXPOSED_ENUM_NODECL'
> RCPP_EXPOSED_ENUM_NODECL(arrow::ipc::Message::Type)
> ^
> ./arrow_types.h:188:26: error: 'Type' is not a member of 'arrow::ipc::Message'
> RCPP_EXPOSED_ENUM_NODECL(arrow::ipc::Message::Type)
> ^
> /opt/ibm/conda/R/lib64/R/library/Rcpp/include/Rcpp/macros/module.h:76:106:
> note: in definition of macro 'RCPP_EXPOSED_ENUM_AS'
> #define RCPP_EXPOSED_ENUM_AS(CLASS) namespace Rcpp{ namespace traits{
> template<> struct r_type_traits< CLASS >{ typedef r_type_enum_tag r_category
> ; } ; }}
>
> ^
> ./arrow_types.h:188:1: note: in expansion of macro 'RCPP_EXPOSED_ENUM_NODECL'
> RCPP_EXPOSED_ENUM_NODECL(arrow::ipc::Message::Type)
> ^
> [0m[91m/opt/ibm/conda/R/lib64/R/library/Rcpp/include/Rcpp/macros/module.h:76:112:
> error: template argument 1 is invalid
> #define RCPP_EXPOSED_ENUM_AS(CLASS) namespace Rcpp{ namespace traits{
> template<> struct r_type_traits< CLASS >{ typedef r_type_enum_tag r_category
> ; } ; }}
>
> ^
> /opt/ibm/conda/R/lib64/R/library/Rcpp/include/Rcpp/macros/module.h:80:3:
> note: in expansion of macro 'RCPP_EXPOSED_ENUM_AS'
> RCPP_EXPOSED_ENUM_AS(CLASS) \
> ^
> ./arrow_types.h:188:1: note: in expansion of macro 'RCPP_EXPOSED_ENUM_NODECL'
> RCPP_EXPOSED_ENUM_NODECL(arrow::ipc::Message::Type)
> ^
> [0m[91m./arrow_types.h:188:26: error: 'Type' is not a member of
> 'arrow::ipc::Message'
> RCPP_EXPOSED_ENUM_NODECL(arrow::ipc::Message::Type)
> ^
> /opt/ibm/conda/R/lib64/R/library/Rcpp/include/Rcpp/macros/module.h:77:109:
> note: in definition of macro 'RCPP_EXPOSED_ENUM_WRAP'
> #define RCPP_EXPOSED_ENUM_WRAP(CLASS) namespace Rcpp{ namespace traits{
> template<> struct wrap_type_traits< CLASS >{typedef wrap_type_enum_tag
> wrap_category ; } ; }}
>
> ^
> ./arrow_types.h:188:1: note: in expansion of macro 'RCPP_EXPOSED_ENUM_NODECL'
> RCPP_EXPOSED_ENUM_NODECL(arrow::ipc::Message::Type)
> ^
> [0m[91m./arrow_types.h:188:26: error: 'Type' is not a member of
> 'arrow::ipc::Message'
> RCPP_EXPOSED_ENUM_NODECL(arrow::ipc::Message::Type)
> ^
> /opt/ibm/conda/R/lib64/R/library/Rcpp/include/Rcpp/macros/module.h:77:109:
> note: in definition of macro 'RCPP_EXPOSED_ENUM_WRAP'
> #define RCPP_EXPOSED_ENUM_WRAP(CLASS) namespace Rcpp{ namespace traits{
> template<> struct wrap_type_traits< CLASS >{typedef wrap_type_enum_tag
> wrap_category ; } ; }}
>
> ^
> ./arrow_types.h:188:1: note: in expansion of macro 'RCPP_EXPOSED_ENUM_NODECL'
> RCPP_EXPOSED_ENUM_NODECL(arrow::ipc::Message::Type)
> ^
> [0m[91m/opt/ibm/conda/R/lib64/R/library/Rcpp/include/Rcpp/macros/module.h:77:115:
> error: template argument 1 is invalid
> #define RCPP_EXPOSED_ENUM_WRAP(CLASS) namespace Rcpp{ namespace traits{
> template<> struct wrap_type_traits< CLASS >{typedef wrap_type_enum_tag
> wrap_category ; } ; }}
>
> ^
> /opt/ibm/conda/R/lib64/R/library/Rcpp/include/Rcpp/macros/module.h:81:3:
> note: in expansion of macro 'RCPP_EXPOSED_ENUM_WRAP'
> RCPP_EXPOSED_ENUM_WRAP(CLASS)
> ^
> ./arrow_types.h:188:1: note: in expansion of macro 'RCPP_EXPOSED_ENUM_NODECL'
> RCPP_EXPOSED_ENUM_NODECL(arrow::ipc::Message::Type)
> ^
> [0m[91mIn file included from array.cpp:18:0:
> array.cpp: In function 'arrow::ArrayVector StructArray__Flatten(const
> std::shared_ptr<arrow::StructArray>&)':
> array.cpp:139:67: error: no matching function for call to
> 'arrow::StructArray::Flatten(arrow::MemoryPool*, arrow::ArrayVector*)'
> STOP_IF_NOT_OK(array->Flatten(arrow::default_memory_pool(), &out));
> ^
> ./arrow_types.h:41:11: note: in definition of macro 'STOP_IF_NOT'
> if (!(TEST)) Rcpp::stop(MSG); \
> ^
> array.cpp:139:3: note: in expansion of macro 'STOP_IF_NOT_OK'
> STOP_IF_NOT_OK(array->Flatten(arrow::default_memory_pool(), &out));
> ^
> [0m[91marray.cpp:139:67: note: candidate is:
> STOP_IF_NOT_OK(array->Flatten(arrow::default_memory_pool(), &out));
> ^
> ./arrow_types.h:41:11: note: in definition of macro 'STOP_IF_NOT'
> if (!(TEST)) Rcpp::stop(MSG); \
> ^
> array.cpp:139:3: note: in expansion of macro 'STOP_IF_NOT_OK'
> STOP_IF_NOT_OK(array->Flatten(arrow::default_memory_pool(), &out));
> ^
> In file included from /usr/include/arrow/array.h:29:0,
> from /usr/include/arrow/api.h:22,
> from ./arrow_types.h:167,
> from array.cpp:18:
> /usr/include/arrow/array/array_nested.h:362:23: note:
> arrow::Result<std::vector<std::shared_ptr<arrow::Array> > >
> arrow::StructArray::Flatten(arrow::MemoryPool*) const
> Result<ArrayVector> Flatten(MemoryPool* pool = default_memory_pool())
> const;
> ^
> /usr/include/arrow/array/array_nested.h:362:23: note: candidate expects 1
> argument, 2 provided
> [0m[91mIn file included from array.cpp:18:0:
> array.cpp:139:67: error: no matching function for call to
> 'arrow::StructArray::Flatten(arrow::MemoryPool*, arrow::ArrayVector*)'
> STOP_IF_NOT_OK(array->Flatten(arrow::default_memory_pool(), &out));
> ^
> ./arrow_types.h:41:29: note: in definition of macro 'STOP_IF_NOT'
> if (!(TEST)) Rcpp::stop(MSG); \
> ^
> array.cpp:139:3: note: in expansion of macro 'STOP_IF_NOT_OK'
> STOP_IF_NOT_OK(array->Flatten(arrow::default_memory_pool(), &out));
> ^
> [0m[91marray.cpp:139:67: note: candidate is:
> STOP_IF_NOT_OK(array->Flatten(arrow::default_memory_pool(), &out));
> ^
> ./arrow_types.h:41:29: note: in definition of macro 'STOP_IF_NOT'
> if (!(TEST)) Rcpp::stop(MSG); \
> ^
> array.cpp:139:3: note: in expansion of macro 'STOP_IF_NOT_OK'
> STOP_IF_NOT_OK(array->Flatten(arrow::default_memory_pool(), &out));
> ^
> [0m[91mIn file included from /usr/include/arrow/array.h:29:0,
> from /usr/include/arrow/api.h:22,
> from ./arrow_types.h:167,
> from array.cpp:18:
> /usr/include/arrow/array/array_nested.h:362:23: note:
> arrow::Result<std::vector<std::shared_ptr<arrow::Array> > >
> arrow::StructArray::Flatten(arrow::MemoryPool*) const
> Result<ArrayVector> Flatten(MemoryPool* pool = default_memory_pool())
> const;
> ^
> /usr/include/arrow/array/array_nested.h:362:23: note: candidate expects 1
> argument, 2 provided
> [0m[91mmake: *** [array.o] Error 1
> [0m[91mERROR: compilation failed for package 'arrow'
> [0m[91m* removing '/opt/ibm/conda/R/lib64/R/library/arrow'
> [0m[91mError: Failed to install 'arrow' from GitHub:
> (converted from warning) installation of package
> '/tmp/Rtmpycmy4e/filea4b08588a/arrow_0.14.1.tar.gz' had non-zero exit status
> Execution halted
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