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https://issues.apache.org/jira/browse/ARROW-11249?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17265976#comment-17265976
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Sindre Froyn edited comment on ARROW-11249 at 1/15/21, 11:57 AM:
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Thanks for taking the time to reading the issue. I tried the command you
suggested, but I still got the same issue, just a bit different.
{code:java}
*** Successfully retrieved C++ source
*** Proceeding without C++ dependencies
Warning message:
In unzip(tf1, exdir = src_dir) : error 1 in extracting from zip file
{code}
I will try to find out what the issue with unzip is and see if I can resolve it
and report back later.
was (Author: sindref900):
Thanks for taking the time to reading the issue. I tried the command you
suggested, but I still got the same issue, just a bit different.
{code:java}
*** Successfully retrieved C++ source
*** Proceeding without C++ dependencies
Warning message:
In unzip(tf1, exdir = src_dir) : error 1 in extracting from zip file
{code}
Anyway, I will try to find out what the issue with unzip is and see if I can
resolve it.
> [R] installation failure on CentOS 7
> ------------------------------------
>
> Key: ARROW-11249
> URL: https://issues.apache.org/jira/browse/ARROW-11249
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Affects Versions: 2.0.0
> Environment: CentOS 7
> Reporter: Sindre Froyn
> Priority: Major
>
> I am experiencing some problems with installing the 'arrow' package on my Red
> Hat linux server. It looks like my issues and setup are very closely related
> to the ones described in this ticket:
> https://issues.apache.org/jira/browse/ARROW-8586
> However, even if the issue is marked as resolved, and I tried installing
> arrow package version 0.17.0 with the fixes mentioned, it still doesn't work.
> Any advice would be greatly appreciated!
> Here are the environment variables I have set:
> {code:java}
> g020029@~ $ echo $CC
> /usr/bin/gcc
> g020029@~ $ echo $CXX
> /usr/bin/g++
> g020029@~ $ echo $LIBARROW_BINARY
> centos-7
> g020029@~ $ echo $ARROW_R_DEV
> true{code}
> I am not using devtools-8, which was reported as a possible issue in the
> other ticket.
> {code:java}
> g020029@~ $ which gcc
> /usr/bin/gcc
> g020029@~ $ /usr/bin/gcc --version
> gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
> Copyright (C) 2015 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
> g020029@~ $ which g++
> /usr/bin/g++
> g020029@~ $ /usr/bin/g++ --version
> g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
> Copyright (C) 2015 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
> {code}
>
> If it is important, here is the lsb version.
> {code:java}
> g020029@~ $ lsb_release -rs
> 7.5{code}
> Finally, here is the output from the installation with a test-run afterwards.
> (Looks like the output isn't more verbose even if ARROW_R_DEV is set to true).
>
> {code:java}
> > install.packages("arrow", repos="https://cran.uib.no/";)
> Installing package into
> ‘/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5’
> (as ‘lib’ is unspecified)
> % Total % Received % Xferd Average Speed Time Time Time Current
> Dload Upload Total Spent Left Speed
> 100 315k 100 315k 0 0 292k 0 0:00:01 0:00:01 --:--:-- 292k
> * installing *source* package ‘arrow’ ...
> ** package ‘arrow’ successfully unpacked and MD5 sums checked
> % Total % Received % Xferd Average Speed Time Time Time Current
> Dload Upload Total Spent Left Speed
> 100 33 0 33 0 0 49 0 --:--:-- --:--:-- --:--:-- 49
> *** Successfully retrieved C++ binaries for centos-7
> Warning message:
> In unzip(bin_file, exdir = dst_dir) : error 1 in extracting from zip file
> ------------------------- NOTE ---------------------------
> After installation, please run arrow::install_arrow()
> for help installing required runtime libraries
> ---------------------------------------------------------
> ** libs
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shar ed/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPL EMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> array.cpp -o array.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shar ed/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPL EMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> array_from_vector.cpp -o array_from_vector.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shar ed/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPL EMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> array_to_vector.cpp -o a rray_to_vector.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_ 64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATIO N -g -O2 -c
> arraydata.cpp -o arraydata.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_ 64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATIO N -g -O2 -c
> arrowExports.cpp -o arrowExports.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_ 64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATIO N -g -O2 -c
> buffer.cpp -o buffer.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pcENTATION -fpic -DU_STATIC_IMPLEMENTATION
> -g -O2 -c chunkedarray.cpp -o chunkedarray.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pcENTATION -fpic -DU_STATIC_IMPLEMENTATION
> -g -O2 -c compression.cpp -o compression.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pcENTATION -fpic -DU_STATIC_IMPLEMENTATION
> -g -O2 -c compute.cpp -o compute.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pcENTATION -fpic -DU_STATIC_IMPLEMENTATION
> -g -O2 -c csv.cpp -o csv.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pcENTATION -fpic -DU_STATIC_IMPLEMENTATION
> -g -O2 -c dataset.cpp -o dataset.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pcENTATION -fpic -DU_STATIC_IMPLEMENTATION
> -g -O2 -c datatype.cpp -o datatype.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pcENTATION -fpic -DU_STATIC_IMPLEMENTATION
> -g -O2 -c expression.cpp -o expression.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> feather.cpp -o feather.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c field.cpp
> -o field.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> filesystem.cpp -o filesystem.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> imports.cpp -o imports.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c io.cpp -o
> io.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c json.cpp
> -o json.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> memorypool.cpp -o memorypool.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> message.cpp -o message.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> parquet.cpp -o parquet.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> py-to-r.cpp -o py-to-r.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> recordbatch.cpp -o recordbatch.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> recordbatchreader.cpp -o recordbatchreader.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> recordbatchwriter.cpp -o recordbatchwriter.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> scalar.cpp -o scalar.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> schema.cpp -o schema.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> symbols.cpp -o symbols.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c table.cpp
> -o table.o
> g++ -std=gnu++11 -I/opt/microsoft/ropen/3.5.1/lib64/R/include -DNDEBUG
> -I"/shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/cpp11/include"
> -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c
> threadpool.cpp -o threadpool.o
> g++ -std=gnu++11 -shared -L/opt/microsoft/ropen/3.5.1/lib64/R/lib -o arrow.so
> array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o
> buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o
> expression.o feather.o field.o filesystem.o imports.o io.o json.o
> memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o
> recordbatchwriter.o scalar.o schema.o symbols.o table.o threadpool.o
> -L/opt/microsoft/ropen/3.5.1/lib64/R/lib -lR
> installing to
> /shared/home/G020029/R/x86_64-pc-linux-gnu-library/3.5/arrow/libs
> ** R
> ** inst
> ** byte-compile and prepare package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded
> * DONE (arrow)
> The downloaded source packages are in
> ‘/tmp/RtmpXNtt3z/downloaded_packages’
> > library("arrow")
> Attaching package: ‘arrow’
> The following object is masked from ‘package:utils’:
> timestamp
> > tt2 = read_parquet(file = "/mnt_g/GF_Prising/G020029/test2.parquet")
> Error in io___MemoryMappedFile__Open(path, mode) :
> Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow()
> to install required runtime libraries.
> {code}
>
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