bers created ARROW-12503:
----------------------------
Summary: Cannot call io___MemoryMappedFile__Open()
Key: ARROW-12503
URL: https://issues.apache.org/jira/browse/ARROW-12503
Project: Apache Arrow
Issue Type: Bug
Environment: R4.0.5
openSUSE Leap 15.2
Reporter: bers
I have checked
[https://arrow.apache.org/docs/r/articles/install.html#package-installed-without-c-dependencies|https://arrow.apache.org/docs/r/articles/install.html#package-installed-without-c-dependencies,]
and that none of the known issues apply to me.
So then it's telling me to issue `[arrow::install_arrow(verbose =
TRUE)|https://arrow.apache.org/docs/r/reference/install_arrow.html]`, which I
did. Here's the output:
----
```
> arrow::install_arrow(verbose = TRUE)
Installing package into ‘/data2/bers/opt/R/4.0/library’
(as ‘lib’ is unspecified)
trying URL 'https://cran.r-project.org/src/contrib/arrow_3.0.0.tar.gz'
Content type 'application/x-gzip' length 344814 bytes (336 KB)
==================================================
downloaded 336 KB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
trying URL
'https://dl.bintray.com/ursalabs/arrow-r/libarrow/bin/opensuse-15/arrow-3.0.0.zip'
Error in download.file(from_url, to_file, quiet = quietly) :
cannot open URL
'https://dl.bintray.com/ursalabs/arrow-r/libarrow/bin/opensuse-15/arrow-3.0.0.zip'
*** No C++ binaries found for opensuse-15
trying URL
'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
Error in download.file(from_url, to_file, quiet = quietly) :
cannot open URL
'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
trying URL
'https://www.apache.org/dyn/closer.lua?action=download&filename=arrow/arrow-3.0.0/apache-arrow-3.0.0.tar.gz'
Content type 'application/x-gzip' length 8200790 bytes (7.8 MB)
==================================================
downloaded 7.8 MB
*** Successfully retrieved C++ source
*** Building C++ libraries
*** Building with MAKEFLAGS= -j2
**** arrow with
SOURCE_DIR="/tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp"
BUILD_DIR="/tmp/RtmpOXZGhl/file1568178b21a6" DEST_DIR="libarrow/arrow-3.0.0"
CMAKE="/data2/bers/opt/cmake/bin/cmake" CC="gcc" CXX="g++ -std=gnu++11"
LDFLAGS="-L/usr/local/lib64" ARROW_S3=ON ARROW_MIMALLOC=ON
++ pwd
+ : /tmp/RtmppXbaGR/R.INSTALL155322509007/arrow
+ : /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
+ : /tmp/RtmpOXZGhl/file1568178b21a6
+ : libarrow/arrow-3.0.0
+ : /data2/bers/opt/cmake/bin/cmake
++ cd /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
++ pwd
+ SOURCE_DIR=/tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
++ mkdir -p libarrow/arrow-3.0.0
++ cd libarrow/arrow-3.0.0
++ pwd
+ DEST_DIR=/tmp/RtmppXbaGR/R.INSTALL155322509007/arrow/libarrow/arrow-3.0.0
+ '[' '' = '' ']'
+ which ninja
+ '[' FALSE = false ']'
+ ARROW_DEFAULT_PARAM=OFF
+ mkdir -p /tmp/RtmpOXZGhl/file1568178b21a6
+ pushd /tmp/RtmpOXZGhl/file1568178b21a6
/tmp/RtmpOXZGhl/file1568178b21a6 /tmp/RtmppXbaGR/R.INSTALL155322509007/arrow
+ /data2/bers/opt/cmake/bin/cmake -DARROW_BOOST_USE_SHARED=OFF
-DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON
-DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON
-DARROW_DEPENDENCY_SOURCE=BUNDLED -DARROW_FILESYSTEM=ON -DARROW_JEMALLOC=ON
-DARROW_MIMALLOC=ON -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_S3=ON
-DARROW_WITH_BROTLI=OFF -DARROW_WITH_BZ2=OFF -DARROW_WITH_LZ4=OFF
-DARROW_WITH_SNAPPY=OFF -DARROW_WITH_UTF8PROC=OFF -DARROW_WITH_ZLIB=OFF
-DARROW_WITH_ZSTD=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib
-DCMAKE_INSTALL_PREFIX=/tmp/RtmppXbaGR/R.INSTALL155322509007/arrow/libarrow/arrow-3.0.0
-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=ON -G 'Unix
Makefiles' /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
-- Building using CMake version: 3.19.5
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 3.0.0 (full: '3.0.0')
-- Arrow SO version: 300 (full: 300.0.0)
-- clang-tidy not found
-- clang-format not found
-- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN)
-- infer not found
fatal: not a git repository (or any of the parent directories): .git
-- Could NOT find Python3 (missing: Python3_EXECUTABLE Interpreter)
Reason given by package:
Interpreter: Cannot use the interpreter "/data2/bers/opt/pyenv/shims/python3.9"
-- Found cpplint executable at
/tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp/build-support/cpplint.py
-- System processor: x86_64
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_AVX2
-- Performing Test CXX_SUPPORTS_AVX2 - Success
-- Performing Test CXX_SUPPORTS_AVX512
-- Performing Test CXX_SUPPORTS_AVX512 - Success
-- Arrow build warning level: PRODUCTION
Using ld linker
Configured for RELEASE build (set with cmake
-DCMAKE_BUILD_TYPE=\{release,debug,...})
-- Build Type: RELEASE
-- Using BUNDLED approach to find dependencies
-- ARROW_ABSL_BUILD_VERSION: 0f3bb466b868b523cf1dc9b2aaaed65c77b28862
-- ARROW_AWSSDK_BUILD_VERSION: 1.8.90
-- ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.1.5
-- ARROW_AWS_C_COMMON_BUILD_VERSION: v0.4.59
-- ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.1.5
-- ARROW_BOOST_BUILD_VERSION: 1.71.0
-- ARROW_BROTLI_BUILD_VERSION: v1.0.7
-- ARROW_BZIP2_BUILD_VERSION: 1.0.8
-- ARROW_CARES_BUILD_VERSION: 1.16.1
-- ARROW_GBENCHMARK_BUILD_VERSION: v1.5.2
-- ARROW_GFLAGS_BUILD_VERSION: v2.2.2
-- ARROW_GLOG_BUILD_VERSION: v0.4.0
-- ARROW_GRPC_BUILD_VERSION: v1.33.2
-- ARROW_GTEST_BUILD_VERSION: 1.10.0
-- ARROW_JEMALLOC_BUILD_VERSION: 5.2.1
-- ARROW_LZ4_BUILD_VERSION: v1.9.2
-- ARROW_MIMALLOC_BUILD_VERSION: v1.6.4
-- ARROW_ORC_BUILD_VERSION: 1.6.2
-- ARROW_PROTOBUF_BUILD_VERSION: v3.13.0
-- ARROW_RAPIDJSON_BUILD_VERSION: 1a803826f1197b5e30703afe4b9c0e7dd48074f5
-- ARROW_RE2_BUILD_VERSION: 2019-08-01
-- ARROW_SNAPPY_BUILD_VERSION: 1.1.8
-- ARROW_THRIFT_BUILD_VERSION: 0.12.0
-- ARROW_THRIFT_BUILD_MD5_CHECKSUM: 3deebbb4d1ca77dd9c9e009a1ea02183
-- ARROW_UTF8PROC_BUILD_VERSION: v2.5.0
-- ARROW_ZLIB_BUILD_VERSION: 1.2.11
-- ARROW_ZSTD_BUILD_VERSION: v1.4.5
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Looking for __SIZEOF_INT128__
-- Looking for __SIZEOF_INT128__ - found
-- Boost include dir:
/tmp/RtmpOXZGhl/file1568178b21a6/boost_ep-prefix/src/boost_ep
-- Boost libraries: boost_system_static;boost_filesystem_static
-- Found OpenSSL: /usr/lib64/libcrypto.so (found suitable version "1.1.1d",
minimum required is "1.0.2")
-- Found OpenSSL Crypto Library: /usr/lib64/libcrypto.so
-- Building with OpenSSL (Version: 1.1.1d) support
Building Apache Thrift from source
-- Building (vendored) jemalloc from source
-- Building (vendored) mimalloc from source
-- Building RapidJSON from source
-- Building ZLIB from source
-- Building RE2 from source
-- Found hdfs.h at:
/tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp/thirdparty/hadoop/include/hdfs.h
Building AWS C++ SDK from source
-- Found CURL: /usr/lib64/libcurl.so (found version "7.72.0")
-- Found AWS SDK headers:
/tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-install/include
-- Found AWS SDK libraries:
aws-cpp-sdk-identity-management;aws-cpp-sdk-sts;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-s3;aws-cpp-sdk-core;AWS::aws-c-event-stream;AWS::aws-checksums;AWS::aws-c-common
-- All bundled static libraries:
thrift::thrift;jemalloc::jemalloc;mimalloc::mimalloc;ZLIB::ZLIB;re2::re2;aws-cpp-sdk-identity-management;aws-cpp-sdk-sts;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-s3;aws-cpp-sdk-core;AWS::aws-c-event-stream;AWS::aws-checksums;AWS::aws-c-common
-- CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2
-- CMAKE_CXX_FLAGS: -Wno-noexcept-type -Wno-subobject-linkage
-fdiagnostics-color=always -O3 -DNDEBUG -Wall -fno-semantic-interposition
-msse4.2
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include
-- Creating bundled static library target arrow_bundled_dependencies at
/tmp/RtmpOXZGhl/file1568178b21a6/release/libarrow_bundled_dependencies.a
-- ---------------------------------------------------------------------
-- Arrow version: 3.0.0
--
-- Build configuration summary:
-- Generator: Unix Makefiles
-- Build type: RELEASE
-- Source directory: /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
-- Install prefix:
/tmp/RtmppXbaGR/R.INSTALL155322509007/arrow/libarrow/arrow-3.0.0
--
-- Compile and link options:
--
-- ARROW_CXXFLAGS="" [default=""]
-- Compiler flags to append when compiling Arrow
-- ARROW_BUILD_STATIC=ON [default=ON]
-- Build static libraries
-- ARROW_BUILD_SHARED=OFF [default=ON]
-- Build shared libraries
-- ARROW_PACKAGE_KIND="" [default=""]
-- Arbitrary string that identifies the kind of package
-- (for informational purposes)
-- ARROW_GIT_ID="" [default=""]
-- The Arrow git commit id (if any)
-- ARROW_GIT_DESCRIPTION="" [default=""]
-- The Arrow git commit description (if any)
-- ARROW_NO_DEPRECATED_API=OFF [default=OFF]
-- Exclude deprecated APIs from build
-- ARROW_USE_CCACHE=ON [default=ON]
-- Use ccache when compiling (if available)
-- ARROW_USE_LD_GOLD=OFF [default=OFF]
-- Use ld.gold for linking on Linux (if available)
-- ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF]
-- Use precompiled headers when compiling
-- ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512]
-- Compile-time SIMD optimization level
-- ARROW_RUNTIME_SIMD_LEVEL=MAX [default=NONE|SSE4_2|AVX2|AVX512|MAX]
-- Max runtime SIMD optimization level
-- ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto]
-- Arm64 arch and extensions
-- ARROW_ALTIVEC=ON [default=ON]
-- Build with Altivec if compiler has support
-- ARROW_RPATH_ORIGIN=OFF [default=OFF]
-- Build Arrow libraries with RATH set to $ORIGIN
-- ARROW_INSTALL_NAME_RPATH=ON [default=ON]
-- Build Arrow libraries with install_name set to @rpath
-- ARROW_GGDB_DEBUG=ON [default=ON]
-- Pass -ggdb flag to debug builds
--
-- Test and benchmark options:
--
-- ARROW_BUILD_EXAMPLES=OFF [default=OFF]
-- Build the Arrow examples
-- ARROW_BUILD_TESTS=OFF [default=OFF]
-- Build the Arrow googletest unit tests
-- ARROW_ENABLE_TIMING_TESTS=ON [default=ON]
-- Enable timing-sensitive tests
-- ARROW_BUILD_INTEGRATION=OFF [default=OFF]
-- Build the Arrow integration test executables
-- ARROW_BUILD_BENCHMARKS=OFF [default=OFF]
-- Build the Arrow micro benchmarks
-- ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF]
-- Build the Arrow micro reference benchmarks
-- ARROW_TEST_LINKAGE=static [default=shared|static]
-- Linkage of Arrow libraries with unit tests executables.
-- ARROW_FUZZING=OFF [default=OFF]
-- Build Arrow Fuzzing executables
-- ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF]
-- Enable unit tests which use large memory
--
-- Lint options:
--
-- ARROW_ONLY_LINT=OFF [default=OFF]
-- Only define the lint and check-format targets
-- ARROW_VERBOSE_LINT=OFF [default=OFF]
-- If off, 'quiet' flags will be passed to linting tools
-- ARROW_GENERATE_COVERAGE=OFF [default=OFF]
-- Build with C++ code coverage enabled
--
-- Checks options:
--
-- ARROW_TEST_MEMCHECK=OFF [default=OFF]
-- Run the test suite using valgrind --tool=memcheck
-- ARROW_USE_ASAN=OFF [default=OFF]
-- Enable Address Sanitizer checks
-- ARROW_USE_TSAN=OFF [default=OFF]
-- Enable Thread Sanitizer checks
-- ARROW_USE_UBSAN=OFF [default=OFF]
-- Enable Undefined Behavior sanitizer checks
--
-- Project component options:
--
-- ARROW_BUILD_UTILITIES=OFF [default=OFF]
-- Build Arrow commandline utilities
-- ARROW_COMPUTE=ON [default=OFF]
-- Build the Arrow Compute Modules
-- ARROW_CSV=ON [default=OFF]
-- Build the Arrow CSV Parser Module
-- ARROW_CUDA=OFF [default=OFF]
-- Build the Arrow CUDA extensions (requires CUDA toolkit)
-- ARROW_DATASET=ON [default=OFF]
-- Build the Arrow Dataset Modules
-- ARROW_FILESYSTEM=ON [default=OFF]
-- Build the Arrow Filesystem Layer
-- ARROW_FLIGHT=OFF [default=OFF]
-- Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers)
-- ARROW_GANDIVA=OFF [default=OFF]
-- Build the Gandiva libraries
-- ARROW_HDFS=OFF [default=OFF]
-- Build the Arrow HDFS bridge
-- ARROW_HIVESERVER2=OFF [default=OFF]
-- Build the HiveServer2 client and Arrow adapter
-- ARROW_IPC=ON [default=ON]
-- Build the Arrow IPC extensions
-- ARROW_JEMALLOC=ON [default=ON]
-- Build the Arrow jemalloc-based allocator
-- ARROW_JNI=OFF [default=OFF]
-- Build the Arrow JNI lib
-- ARROW_JSON=ON [default=OFF]
-- Build Arrow with JSON support (requires RapidJSON)
-- ARROW_MIMALLOC=ON [default=OFF]
-- Build the Arrow mimalloc-based allocator
-- ARROW_PARQUET=ON [default=OFF]
-- Build the Parquet libraries
-- ARROW_ORC=OFF [default=OFF]
-- Build the Arrow ORC adapter
-- ARROW_PLASMA=OFF [default=OFF]
-- Build the plasma object store along with Arrow
-- ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF]
-- Build the plasma object store java client
-- ARROW_PYTHON=OFF [default=OFF]
-- Build the Arrow CPython extensions
-- ARROW_S3=ON [default=OFF]
-- Build Arrow with S3 support (requires the AWS SDK for C++)
-- ARROW_TENSORFLOW=OFF [default=OFF]
-- Build Arrow with TensorFlow support enabled
-- ARROW_TESTING=OFF [default=OFF]
-- Build the Arrow testing libraries
--
-- Thirdparty toolchain options:
--
-- ARROW_DEPENDENCY_SOURCE=BUNDLED [default=AUTO|BUNDLED|SYSTEM|CONDA|BREW]
-- Method to use for acquiring arrow's build dependencies
-- ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF]
-- Show output from ExternalProjects rather than just logging to files
-- ARROW_DEPENDENCY_USE_SHARED=ON [default=ON]
-- Link to shared libraries
-- ARROW_BOOST_USE_SHARED=OFF [default=ON]
-- Rely on boost shared libraries where relevant
-- ARROW_BROTLI_USE_SHARED=ON [default=ON]
-- Rely on Brotli shared libraries where relevant
-- ARROW_BZ2_USE_SHARED=ON [default=ON]
-- Rely on Bz2 shared libraries where relevant
-- ARROW_GFLAGS_USE_SHARED=ON [default=ON]
-- Rely on GFlags shared libraries where relevant
-- ARROW_GRPC_USE_SHARED=ON [default=ON]
-- Rely on gRPC shared libraries where relevant
-- ARROW_LZ4_USE_SHARED=ON [default=ON]
-- Rely on lz4 shared libraries where relevant
-- ARROW_OPENSSL_USE_SHARED=ON [default=ON]
-- Rely on OpenSSL shared libraries where relevant
-- ARROW_PROTOBUF_USE_SHARED=ON [default=ON]
-- Rely on Protocol Buffers shared libraries where relevant
-- ARROW_THRIFT_USE_SHARED=ON [default=ON]
-- Rely on thrift shared libraries where relevant
-- ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
-- Rely on utf8proc shared libraries where relevant
-- ARROW_SNAPPY_USE_SHARED=ON [default=ON]
-- Rely on snappy shared libraries where relevant
-- ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
-- Rely on utf8proc shared libraries where relevant
-- ARROW_ZSTD_USE_SHARED=ON [default=ON]
-- Rely on zstd shared libraries where relevant
-- ARROW_USE_GLOG=OFF [default=OFF]
-- Build libraries with glog support for pluggable logging
-- ARROW_WITH_BACKTRACE=ON [default=ON]
-- Build with backtrace support
-- ARROW_WITH_BROTLI=OFF [default=OFF]
-- Build with Brotli compression
-- ARROW_WITH_BZ2=OFF [default=OFF]
-- Build with BZ2 compression
-- ARROW_WITH_LZ4=OFF [default=OFF]
-- Build with lz4 compression
-- ARROW_WITH_SNAPPY=OFF [default=OFF]
-- Build with Snappy compression
-- ARROW_WITH_ZLIB=ON [default=OFF]
-- Build with zlib compression
-- ARROW_WITH_ZSTD=OFF [default=OFF]
-- Build with zstd compression
-- ARROW_WITH_UTF8PROC=OFF [default=ON]
-- Build with support for Unicode properties using the utf8proc library
-- (only used if ARROW_COMPUTE is ON)
-- ARROW_WITH_RE2=ON [default=ON]
-- Build with support for regular expressions using the re2 library
-- (only used if ARROW_COMPUTE or ARROW_GANDIVA is ON)
--
-- Parquet options:
--
-- PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF]
-- Depend only on Thirdparty headers to build libparquet.
-- Always OFF if building binaries
-- PARQUET_BUILD_EXECUTABLES=OFF [default=OFF]
-- Build the Parquet executable CLI tools. Requires static libraries to be
built.
-- PARQUET_BUILD_EXAMPLES=OFF [default=OFF]
-- Build the Parquet examples. Requires static libraries to be built.
-- PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF]
-- Build support for encryption. Fail if OpenSSL is not found
--
-- Gandiva options:
--
-- ARROW_GANDIVA_JAVA=OFF [default=OFF]
-- Build the Gandiva JNI wrappers
-- ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF]
-- Include -static-libstdc++ -static-libgcc when linking with
-- Gandiva static libraries
-- ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""]
-- Compiler flags to append when pre-compiling Gandiva operations
--
-- Advanced developer options:
--
-- ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF]
-- Compile with extra error context (line numbers, code)
-- ARROW_OPTIONAL_INSTALL=OFF [default=OFF]
-- If enabled install ONLY targets that have already been built. Please be
-- advised that if this is enabled 'install' will fail silently on components
-- that have not been built
-- Outputting build configuration summary to
/tmp/RtmpOXZGhl/file1568178b21a6/cmake_summary.json
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/RtmpOXZGhl/file1568178b21a6
+ /data2/bers/opt/cmake/bin/cmake --build . --target install
Scanning dependencies of target jemalloc_ep
Scanning dependencies of target boost_ep
[ 0%] Creating directories for 'jemalloc_ep'
[ 1%] Creating directories for 'boost_ep'
[ 2%] Performing download step (download, verify and extract) for 'jemalloc_ep'
[ 3%] Performing download step (download, verify and extract) for 'boost_ep'
-- jemalloc_ep download command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-download-*.log
[ 4%] No update step for 'jemalloc_ep'
[ 5%] Performing patch step for 'jemalloc_ep'
[ 6%] Performing configure step for 'jemalloc_ep'
-- boost_ep download command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/boost_ep-prefix/src/boost_ep-stamp/boost_ep-download-*.log
[ 7%] No update step for 'boost_ep'
[ 8%] No patch step for 'boost_ep'
[ 8%] No configure step for 'boost_ep'
[ 9%] No build step for 'boost_ep'
[ 9%] No install step for 'boost_ep'
[ 10%] Completed 'boost_ep'
[ 10%] Built target boost_ep
Scanning dependencies of target rapidjson_ep
[ 11%] Creating directories for 'rapidjson_ep'
[ 12%] Performing download step (download, verify and extract) for
'rapidjson_ep'
-- rapidjson_ep download command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log
[ 13%] No update step for 'rapidjson_ep'
[ 13%] No patch step for 'rapidjson_ep'
[ 14%] Performing configure step for 'rapidjson_ep'
-- rapidjson_ep configure command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log
[ 15%] Performing build step for 'rapidjson_ep'
-- rapidjson_ep build command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log
[ 16%] Performing install step for 'rapidjson_ep'
-- rapidjson_ep install command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log
[ 16%] Completed 'rapidjson_ep'
[ 16%] Built target rapidjson_ep
Scanning dependencies of target aws_c_common_ep
[ 16%] Creating directories for 'aws_c_common_ep'
[ 17%] Performing download step (download, verify and extract) for
'aws_c_common_ep'
-- aws_c_common_ep download command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-download-*.log
[ 18%] No update step for 'aws_c_common_ep'
[ 19%] No patch step for 'aws_c_common_ep'
[ 20%] Performing configure step for 'aws_c_common_ep'
-- aws_c_common_ep configure command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-configure-*.log
[ 20%] Performing build step for 'aws_c_common_ep'
-- jemalloc_ep configure command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-configure-*.log
[ 20%] Performing build step for 'jemalloc_ep'
-- aws_c_common_ep build command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-build-*.log
[ 21%] Performing install step for 'aws_c_common_ep'
-- aws_c_common_ep install command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-install-*.log
[ 22%] Completed 'aws_c_common_ep'
[ 22%] Built target aws_c_common_ep
Scanning dependencies of target aws_checksums_ep
[ 23%] Creating directories for 'aws_checksums_ep'
[ 24%] Performing download step (download, verify and extract) for
'aws_checksums_ep'
-- aws_checksums_ep download command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-download-*.log
[ 24%] No update step for 'aws_checksums_ep'
[ 25%] No patch step for 'aws_checksums_ep'
[ 26%] Performing configure step for 'aws_checksums_ep'
-- aws_checksums_ep configure command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-configure-*.log
[ 27%] Performing build step for 'aws_checksums_ep'
-- aws_checksums_ep build command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build-*.log
[ 28%] Performing install step for 'aws_checksums_ep'
-- aws_checksums_ep install command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-install-*.log
[ 29%] Completed 'aws_checksums_ep'
[ 29%] Built target aws_checksums_ep
Scanning dependencies of target zlib_ep
[ 30%] Creating directories for 'zlib_ep'
[ 30%] Performing download step (download, verify and extract) for 'zlib_ep'
-- zlib_ep download command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-download-*.log
[ 31%] No update step for 'zlib_ep'
[ 32%] No patch step for 'zlib_ep'
[ 33%] Performing configure step for 'zlib_ep'
-- zlib_ep configure command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-configure-*.log
[ 34%] Performing build step for 'zlib_ep'
-- zlib_ep build command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-build-*.log
[ 35%] Performing install step for 'zlib_ep'
-- zlib_ep install command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-install-*.log
[ 36%] Completed 'zlib_ep'
[ 36%] Built target zlib_ep
Scanning dependencies of target mimalloc_ep
[ 37%] Creating directories for 'mimalloc_ep'
[ 37%] Performing download step (download, verify and extract) for 'mimalloc_ep'
-- Downloading...
dst='/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep-prefix/src/v1.6.4.tar.gz'
timeout='none'
inactivity timeout='none'
-- Using src='https://github.com/microsoft/mimalloc/archive/v1.6.4.tar.gz'
-- [download 100% complete]
-- [download 1% complete]
-- [download 6% complete]
-- [download 14% complete]
-- [download 30% complete]
-- [download 52% complete]
-- [download 64% complete]
-- [download 85% complete]
-- [download 100% complete]
-- Downloading... done
-- extracting...
src='/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep-prefix/src/v1.6.4.tar.gz'
dst='/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep-prefix/src/mimalloc_ep'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 38%] No update step for 'mimalloc_ep'
[ 39%] No patch step for 'mimalloc_ep'
[ 40%] Performing configure step for 'mimalloc_ep'
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
--
-- Library base name: mimalloc
-- Build type : release
-- Install directory:
/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6
-- Build targets : static
--
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
-- Build files have been written to:
/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep-prefix/src/mimalloc_ep-build
[ 40%] Performing build step for 'mimalloc_ep'
Scanning dependencies of target mimalloc-static
[ 7%] Building C object CMakeFiles/mimalloc-static.dir/src/stats.c.o
[ 14%] Building C object CMakeFiles/mimalloc-static.dir/src/random.c.o
[ 21%] Building C object CMakeFiles/mimalloc-static.dir/src/os.c.o
[ 28%] Building C object CMakeFiles/mimalloc-static.dir/src/arena.c.o
[ 35%] Building C object CMakeFiles/mimalloc-static.dir/src/region.c.o
[ 42%] Building C object CMakeFiles/mimalloc-static.dir/src/segment.c.o
[ 50%] Building C object CMakeFiles/mimalloc-static.dir/src/page.c.o
[ 57%] Building C object CMakeFiles/mimalloc-static.dir/src/alloc.c.o
[ 64%] Building C object CMakeFiles/mimalloc-static.dir/src/alloc-aligned.c.o
[ 71%] Building C object CMakeFiles/mimalloc-static.dir/src/alloc-posix.c.o
[ 78%] Building C object CMakeFiles/mimalloc-static.dir/src/heap.c.o
[ 85%] Building C object CMakeFiles/mimalloc-static.dir/src/options.c.o
[ 92%] Building C object CMakeFiles/mimalloc-static.dir/src/init.c.o
[100%] Linking C static library libmimalloc.a
[100%] Built target mimalloc-static
[ 41%] Performing install step for 'mimalloc_ep'
[100%] Built target mimalloc-static
Install the project...
-- Install configuration: "RELEASE"
-- Installing:
/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/libmimalloc.a
-- Installing:
/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/include/mimalloc.h
-- Installing:
/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/include/mimalloc-override.h
-- Installing:
/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/include/mimalloc-new-delete.h
-- Installing:
/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/cmake/mimalloc-config.cmake
-- Installing:
/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/cmake/mimalloc-config-version.cmake
[ 42%] Completed 'mimalloc_ep'
[ 42%] Built target mimalloc_ep
Scanning dependencies of target re2_ep
[ 43%] Creating directories for 're2_ep'
[ 44%] Performing download step (download, verify and extract) for 're2_ep'
-- re2_ep download command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/re2_ep-prefix/src/re2_ep-stamp/re2_ep-download-*.log
[ 45%] No update step for 're2_ep'
[ 46%] No patch step for 're2_ep'
[ 46%] Performing configure step for 're2_ep'
-- re2_ep configure command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/re2_ep-prefix/src/re2_ep-stamp/re2_ep-configure-*.log
[ 47%] Performing build step for 're2_ep'
-- jemalloc_ep build command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-build-*.log
[ 48%] Performing install step for 'jemalloc_ep'
-- jemalloc_ep install command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-install-*.log
[ 49%] Completed 'jemalloc_ep'
[ 49%] Built target jemalloc_ep
Scanning dependencies of target arrow_dataset_objlib
[ 50%] Building CXX object
src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/Unity/unity_1_cxx.cxx.o
[ 51%] Building CXX object
src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/Unity/unity_0_cxx.cxx.o
-- re2_ep build command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-*.log
[ 51%] Performing install step for 're2_ep'
-- re2_ep install command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/re2_ep-prefix/src/re2_ep-stamp/re2_ep-install-*.log
[ 52%] Completed 're2_ep'
[ 52%] Built target re2_ep
Scanning dependencies of target thrift_ep
[ 52%] Creating directories for 'thrift_ep'
[ 53%] Performing download step (download, verify and extract) for 'thrift_ep'
-- thrift_ep download command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-download-*.log
[ 54%] No update step for 'thrift_ep'
[ 55%] No patch step for 'thrift_ep'
[ 56%] Performing configure step for 'thrift_ep'
[ 56%] Built target arrow_dataset_objlib
Scanning dependencies of target aws_c_event_stream_ep
[ 57%] Creating directories for 'aws_c_event_stream_ep'
[ 57%] Performing download step (download, verify and extract) for
'aws_c_event_stream_ep'
-- aws_c_event_stream_ep download command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-download-*.log
[ 58%] No update step for 'aws_c_event_stream_ep'
[ 59%] No patch step for 'aws_c_event_stream_ep'
[ 60%] Performing configure step for 'aws_c_event_stream_ep'
-- aws_c_event_stream_ep configure command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-configure-*.log
[ 60%] Performing build step for 'aws_c_event_stream_ep'
-- aws_c_event_stream_ep build command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-build-*.log
[ 61%] Performing install step for 'aws_c_event_stream_ep'
-- aws_c_event_stream_ep install command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-install-*.log
[ 62%] Completed 'aws_c_event_stream_ep'
[ 62%] Built target aws_c_event_stream_ep
Scanning dependencies of target awssdk_ep
[ 63%] Creating directories for 'awssdk_ep'
[ 64%] Performing download step (download, verify and extract) for 'awssdk_ep'
-- thrift_ep configure command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure-*.log
[ 64%] Performing build step for 'thrift_ep'
-- awssdk_ep download command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-download-*.log
[ 65%] No update step for 'awssdk_ep'
[ 65%] No patch step for 'awssdk_ep'
[ 66%] Performing configure step for 'awssdk_ep'
-- awssdk_ep configure command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-configure-*.log
[ 67%] Performing build step for 'awssdk_ep'
-- thrift_ep build command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-build-*.log
[ 68%] Performing install step for 'thrift_ep'
-- thrift_ep install command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-install-*.log
[ 69%] Completed 'thrift_ep'
[ 69%] Built target thrift_ep
-- awssdk_ep build command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-build-*.log
[ 70%] Performing install step for 'awssdk_ep'
-- awssdk_ep install command succeeded. See also
/tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-install-*.log
[ 70%] Completed 'awssdk_ep'
[ 70%] Built target awssdk_ep
Scanning dependencies of target toolchain
Scanning dependencies of target arrow_bundled_dependencies
[ 70%] Built target toolchain
[ 70%] Bundling
/tmp/RtmpOXZGhl/file1568178b21a6/release/libarrow_bundled_dependencies.a
Scanning dependencies of target arrow_dependencies
/usr/bin/ar:
/tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep/dist//lib/libjemalloc_pic.a:
No such file or directory
make[2]: ***
[src/arrow/CMakeFiles/arrow_bundled_dependencies.dir/build.make:80:
release/libarrow_bundled_dependencies.a] Error 9
make[1]: *** [CMakeFiles/Makefile2:1388:
src/arrow/CMakeFiles/arrow_bundled_dependencies.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 70%] Built target arrow_dependencies
gmake: *** [Makefile:160: all] Error 2
+ popd
/tmp/RtmppXbaGR/R.INSTALL155322509007/arrow
------------------------- NOTE ---------------------------
See https://arrow.apache.org/docs/r/articles/install.html
for help installing Arrow C++ libraries
---------------------------------------------------------
** libs
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c array.cpp -o array.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c array_from_vector.cpp -o array_from_vector.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c array_to_vector.cpp -o array_to_vector.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c arraydata.cpp -o arraydata.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c arrowExports.cpp -o arrowExports.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c buffer.cpp -o buffer.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c chunkedarray.cpp -o chunkedarray.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c compression.cpp -o compression.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c compute.cpp -o compute.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c csv.cpp -o csv.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c dataset.cpp -o dataset.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c datatype.cpp -o datatype.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c expression.cpp -o expression.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c feather.cpp -o feather.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c field.cpp -o field.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c filesystem.cpp -o filesystem.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c imports.cpp -o imports.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c io.cpp -o io.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c json.cpp -o json.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c memorypool.cpp -o memorypool.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c message.cpp -o message.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c parquet.cpp -o parquet.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c py-to-r.cpp -o py-to-r.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c recordbatch.cpp -o recordbatch.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c recordbatchreader.cpp -o recordbatchreader.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c recordbatchwriter.cpp -o recordbatchwriter.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c scalar.cpp -o scalar.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c schema.cpp -o schema.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c symbols.cpp -o symbols.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c table.cpp -o table.o
g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG
-I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic
-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables
-fstack-clash-protection -c threadpool.cpp -o threadpool.o
g++ -std=gnu++11 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o arrow.so
array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o
buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o
expression.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o
message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o
recordbatchwriter.o scalar.o schema.o symbols.o table.o threadpool.o
-L/usr/lib64/R/lib -lR
installing to /data2/bers/opt/R/4.0/library/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arrow)
```
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