[ https://issues.apache.org/jira/browse/ARROW-12860?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Nic Crane updated ARROW-12860: ------------------------------ Description: Posting this on behalf of a friend who has a slight allergy to Jira - he's installed the R package via install.packages, but is getting the following error: {code:java} * installing *source* package 'arrow' ... ** package 'arrow' successfully unpacked and MD5 sums checked ** using staged installation *** Successfully retrieved C++ source *** Building C++ libraries **** arrow PKG_CFLAGS=-I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET PKG_LIBS=-L/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/lib -larrow_dataset -lparquet -larrow -larrow -larrow_bundled_dependencies -larrow_dataset -lparquet ** libs make[1]: Entering directory '/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/src' g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c array.cpp -o array.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c array_to_vector.cpp -o array_to_vector.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c arraydata.cpp -o arraydata.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c arrowExports.cpp -o arrowExports.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c buffer.cpp -o buffer.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c chunkedarray.cpp -o chunkedarray.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c compression.cpp -o compression.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c compute.cpp -o compute.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c csv.cpp -o csv.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c dataset.cpp -o dataset.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c datatype.cpp -o datatype.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c expression.cpp -o expression.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c feather.cpp -o feather.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c field.cpp -o field.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c filesystem.cpp -o filesystem.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c io.cpp -o io.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c json.cpp -o json.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c memorypool.cpp -o memorypool.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c message.cpp -o message.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c parquet.cpp -o parquet.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c py-to-r.cpp -o py-to-r.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c r_to_arrow.cpp -o r_to_arrow.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c recordbatch.cpp -o recordbatch.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c recordbatchreader.cpp -o recordbatchreader.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c recordbatchwriter.cpp -o recordbatchwriter.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c runtimeinfo.cpp -o runtimeinfo.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c scalar.cpp -o scalar.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c schema.cpp -o schema.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c symbols.cpp -o symbols.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c table.cpp -o table.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c threadpool.cpp -o threadpool.o g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c type_infer.cpp -o type_infer.o g++ -std=gnu++11 -shared -L/opt/R/release/lib/R/lib -L/usr/local/lib -o arrow.so array.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o py-to-r.o r_to_arrow.o recordbatch.o recordbatchreader.o recordbatchwriter.o runtimeinfo.o scalar.o schema.o symbols.o table.o threadpool.o type_infer.o -L/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/lib -larrow_dataset -lparquet -larrow -larrow -larrow_bundled_dependencies -larrow_dataset -lparquet -L/opt/R/release/lib/R/lib -lR make[1]: Leaving directory '/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/src' installing to /home/mds/R/r4pi/00LOCK-arrow/00new/arrow/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'arrow' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/home/mds/R/r4pi/00LOCK-arrow/00new/arrow/libs/arrow.so': /home/mds/R/r4pi/00LOCK-arrow/00new/arrow/libs/arrow.so: undefined symbol: __atomic_fetch_add_8 Error: loading failed Execution halted ERROR: loading failed * removing '/home/mds/R/r4pi/arrow' Error: Build of package failed {code} {code:java} > sessionInfo() R version 4.1.0 (2021-05-18) Platform: armv7l-unknown-linux-gnueabihf (32-bit) Running under: Raspbian GNU/Linux 10 (buster)Matrix products: default BLAS/LAPACK: /usr/lib/arm-linux-gnueabihf/libopenblas_armv6p-r0.3.5.solocale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_4.1.0 {code} was: Posting this on behalf of a friend who has a slight allergy to Jira - he's installed the R package via install.packages, but is getting the following error: {code:java} ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'arrow' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/home/mds/R/r4pi/00LOCK-arrow/00new/arrow/libs/arrow.so': /home/mds/R/r4pi/00LOCK-arrow/00new/arrow/libs/arrow.so: undefined symbol: __atomic_fetch_add_8 Error: loading failed Execution halted ERROR: loading failed * removing '/home/mds/R/r4pi/arrow' {code} {code:java} > sessionInfo() R version 4.1.0 (2021-05-18) Platform: armv7l-unknown-linux-gnueabihf (32-bit) Running under: Raspbian GNU/Linux 10 (buster)Matrix products: default BLAS/LAPACK: /usr/lib/arm-linux-gnueabihf/libopenblas_armv6p-r0.3.5.solocale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_4.1.0 {code} > [R] Error when installing R package on Raspbian > ----------------------------------------------- > > Key: ARROW-12860 > URL: https://issues.apache.org/jira/browse/ARROW-12860 > Project: Apache Arrow > Issue Type: Bug > Components: R > Reporter: Nic Crane > Priority: Minor > > Posting this on behalf of a friend who has a slight allergy to Jira - he's > installed the R package via install.packages, but is getting the following > error: > {code:java} > * installing *source* package 'arrow' ... > ** package 'arrow' successfully unpacked and MD5 sums checked > ** using staged installation > *** Successfully retrieved C++ source > *** Building C++ libraries > **** arrow > PKG_CFLAGS=-I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > PKG_LIBS=-L/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/lib > -larrow_dataset -lparquet -larrow -larrow -larrow_bundled_dependencies > -larrow_dataset -lparquet > ** libs > make[1]: Entering directory '/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/src' > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > array.cpp -o array.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > array_to_vector.cpp -o array_to_vector.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > arraydata.cpp -o arraydata.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > arrowExports.cpp -o arrowExports.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > buffer.cpp -o buffer.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > chunkedarray.cpp -o chunkedarray.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > compression.cpp -o compression.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > compute.cpp -o compute.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > csv.cpp -o csv.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > dataset.cpp -o dataset.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > datatype.cpp -o datatype.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > expression.cpp -o expression.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > feather.cpp -o feather.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > field.cpp -o field.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > filesystem.cpp -o filesystem.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > imports.cpp -o imports.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > io.cpp -o io.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > json.cpp -o json.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > memorypool.cpp -o memorypool.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > message.cpp -o message.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > parquet.cpp -o parquet.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > py-to-r.cpp -o py-to-r.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > r_to_arrow.cpp -o r_to_arrow.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > recordbatch.cpp -o recordbatch.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > recordbatchreader.cpp -o recordbatchreader.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > recordbatchwriter.cpp -o recordbatchwriter.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > runtimeinfo.cpp -o runtimeinfo.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > scalar.cpp -o scalar.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > schema.cpp -o schema.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > symbols.cpp -o symbols.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > table.cpp -o table.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > threadpool.cpp -o threadpool.o > g++ -std=gnu++11 -I"/opt/R/release/lib/R/include" -DNDEBUG > -I/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/include > -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET > -I'/home/mds/R/r4pi/cpp11/include' -I/usr/local/include -fpic -g -O2 -c > type_infer.cpp -o type_infer.o > g++ -std=gnu++11 -shared -L/opt/R/release/lib/R/lib -L/usr/local/lib -o > arrow.so array.o array_to_vector.o arraydata.o arrowExports.o buffer.o > chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o > expression.o feather.o field.o filesystem.o imports.o io.o json.o > memorypool.o message.o parquet.o py-to-r.o r_to_arrow.o recordbatch.o > recordbatchreader.o recordbatchwriter.o runtimeinfo.o scalar.o schema.o > symbols.o table.o threadpool.o type_infer.o > -L/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/libarrow/arrow-4.0.0.1/lib > -larrow_dataset -lparquet -larrow -larrow -larrow_bundled_dependencies > -larrow_dataset -lparquet -L/opt/R/release/lib/R/lib -lR > make[1]: Leaving directory '/tmp/RtmpLeOMgI/R.INSTALL7a137b00b451/arrow/src' > installing to /home/mds/R/r4pi/00LOCK-arrow/00new/arrow/libs > ** R > ** inst > ** byte-compile and prepare package for lazy loading > ** help > *** installing help indices > ** building package indices > ** installing vignettes > ** testing if installed package can be loaded from temporary location > Error: package or namespace load failed for 'arrow' in dyn.load(file, DLLpath > = DLLpath, ...): > unable to load shared object > '/home/mds/R/r4pi/00LOCK-arrow/00new/arrow/libs/arrow.so': > /home/mds/R/r4pi/00LOCK-arrow/00new/arrow/libs/arrow.so: undefined symbol: > __atomic_fetch_add_8 > Error: loading failed > Execution halted > ERROR: loading failed > * removing '/home/mds/R/r4pi/arrow' > Error: Build of package failed > {code} > > {code:java} > > sessionInfo() > R version 4.1.0 (2021-05-18) > Platform: armv7l-unknown-linux-gnueabihf (32-bit) > Running under: Raspbian GNU/Linux 10 (buster)Matrix products: default > BLAS/LAPACK: /usr/lib/arm-linux-gnueabihf/libopenblas_armv6p-r0.3.5.solocale: > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: > [1] stats graphics grDevices utils datasets methods base loaded via a > namespace (and not attached): > [1] compiler_4.1.0 > {code} -- This message was sent by Atlassian Jira (v8.3.4#803005)