[
https://issues.apache.org/jira/browse/ARROW-14213?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17426995#comment-17426995
]
Thomas Wutzler commented on ARROW-14213:
----------------------------------------
The admins responded that these packages are installed with the following
versions:
ii libcurl3:amd64 7.47.0-1ubuntu2.19 amd64 easy-to-use client-side URL transfer
library (OpenSSL flavour)
ii libcurl3-gnutls:amd64 7.47.0-1ubuntu2.19 amd64 easy-to-use client-side URL
transfer library (GnuTLS flavour)
ii libcurl4-gnutls-dev:amd64 7.47.0-1ubuntu2.19 amd64 development files and
documentation for libcurl (GnuTLS flavour)
ii openssl 1.0.2g-1ubuntu4.20 amd64 Secure Sockets Layer toolkit -
cryptographic utility
> R arrow package not working on RStudio/Ubuntu
> ---------------------------------------------
>
> Key: ARROW-14213
> URL: https://issues.apache.org/jira/browse/ARROW-14213
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Environment: R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
> Copyright (C) 2020 The R Foundation for Statistical Computing
> Platform: x86_64-pc-linux-gnu (64-bit)
> Reporter: Thomas Wutzler
> Priority: Major
>
> I try reading feather files in R with the arrow package that were generated
> in Python.
> I run on R 3.6.3 on an RStudio server window on linux machine, for which I
> have no other access. I get the message:
> {{Cannot call io___MemoryMappedFile__Open().}}
> According to the advice in the linked help-file:
> [https://cran.r-project.org/web/packages/arrow/vignettes/install.html] I
> create this issue with the full log of the installation:
> {{}}
> > arrow::install_arrow(verbose = TRUE)Installing package into
> > '/Net/Groups/BGI/scratch/twutz/R/atacama-library/3.6'
> (as 'lib' is unspecified)trying URL
> 'https://ftp5.gwdg.de/pub/misc/cran/src/contrib/arrow_5.0.0.2.tar.gz'Content
> type 'application/octet-stream' length 483642 bytes (472
> KB)==================================================downloaded 472 KB*
> installing *source* package 'arrow' ...** package 'arrow' successfully
> unpacked and MD5 sums checked** using staged installationtrying URL
> 'https://arrow-r-nightly.s3.amazonaws.com/libarrow/bin/ubuntu-16.04/arrow-5.0.0.2.zip'Content
> type 'binary/octet-stream' length 17214781 bytes (16.4
> MB)==================================================downloaded 16.4 MB***
> Successfully retrieved C++ binaries for ubuntu-16.04
> **** Binary package requires libcurl and openssl
> **** If installation fails, retry after installing those system requirements
> PKG_CFLAGS=-I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3
> PKG_LIBS=-L/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/lib
> -larrow_dataset -lparquet -larrow -larrow -larrow_bundled_dependencies
> -larrow_dataset -lparquet -lssl -lcrypto -lcurl** libsg++ -std=gnu++11
> -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c RTasks.cpp -o RTasks.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c altrep.cpp -o altrep.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c array.cpp -o array.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c array_to_vector.cpp -o array_to_vector.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c arraydata.cpp -o arraydata.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c arrowExports.cpp -o arrowExports.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c buffer.cpp -o buffer.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c chunkedarray.cpp -o chunkedarray.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c compression.cpp -o compression.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c compute.cpp -o compute.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c config.cpp -o config.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c csv.cpp -o csv.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c dataset.cpp -o dataset.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c datatype.cpp -o datatype.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c expression.cpp -o expression.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c feather.cpp -o feather.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c field.cpp -o field.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c filesystem.cpp -o filesystem.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c imports.cpp -o imports.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c io.cpp -o io.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c json.cpp -o json.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c memorypool.cpp -o memorypool.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c message.cpp -o message.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c parquet.cpp -o parquet.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c py-to-r.cpp -o py-to-r.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c r_to_arrow.cpp -o r_to_arrow.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c recordbatch.cpp -o recordbatch.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c recordbatchreader.cpp -o recordbatchreader.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c recordbatchwriter.cpp -o recordbatchwriter.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c scalar.cpp -o scalar.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c schema.cpp -o schema.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c symbols.cpp -o symbols.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c table.cpp -o table.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c threadpool.cpp -o threadpool.o
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
> -I/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/include
> -DARROW_R_WITH_ARROW -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET
> -DARROW_R_WITH_S3 -I../inst/include/ -fpic -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c type_infer.cpp -o type_infer.o
> g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions
> -Wl,-z,relro -o arrow.so RTasks.o altrep.o array.o array_to_vector.o
> arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o
> config.o csv.o dataset.o datatype.o expression.o feather.o field.o
> filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o py-to-r.o
> r_to_arrow.o recordbatch.o recordbatchreader.o recordbatchwriter.o scalar.o
> schema.o symbols.o table.o threadpool.o type_infer.o
> -L/tmp/RtmpXvu6Oc/R.INSTALL1451f6ede9ea2/arrow/libarrow/arrow-5.0.0.2/lib
> -larrow_dataset -lparquet -larrow -larrow -larrow_bundled_dependencies
> -larrow_dataset -lparquet -lssl -lcrypto -lcurl -L/usr/lib/R/lib
> -lRinstalling to
> /Net/Groups/BGI/scratch/twutz/R/atacama-library/3.6/00LOCK-arrow/00new/arrow/libs**
> R** inst** byte-compile and prepare package for lazy loading** help***
> installing help indices** building package indices** installing vignettes**
> testing if installed package can be loaded from temporary location** checking
> absolute paths in shared objects and dynamic libraries** testing if installed
> package can be loaded from final location** testing if installed package
> keeps a record of temporary installation path* DONE (arrow)The downloaded
> source packages are in
> '/tmp/RtmpYnPIoy/downloaded_packages'
>
> After seemingly successful installation I still get the error:
> > pydir <- "~/twutz/devpy/ecosystem-transpiration"> ec <-
> > arrow::read_feather(file.path(pydir,"ec_tea_tutorial.feather"))Error in
> > io___MemoryMappedFile__Open(path, mode) :
> Cannot call io___MemoryMappedFile__Open(). See
> https://arrow.apache.org/docs/r/articles/install.html for help installing
> Arrow C++ libraries.
>
>
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