[ https://issues.apache.org/jira/browse/ARROW-17595?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17601056#comment-17601056 ]
Kouhei Sutou commented on ARROW-17595: -------------------------------------- Could you try "ol8_appstream" instead of "acx-appstream"? I couldn't reproduce this with "ol8_appstream". > [C++] Installation Error stdlib.h no such file or directory > ----------------------------------------------------------- > > Key: ARROW-17595 > URL: https://issues.apache.org/jira/browse/ARROW-17595 > Project: Apache Arrow > Issue Type: Bug > Components: C++ > Affects Versions: 9.0.0 > Environment: OEL 8.5 > Reporter: Robert Tidwell > Priority: Major > > Getting error installing arrow. > {noformat} > /opt/rh/gcc-toolset-11/root/usr/include/c++/11/cstdlib:75:15: fatal error: > stdlib.h: No such file or directory > 75 | #include_next <stdlib.h> > {noformat} > Using the c\+\+11 toolset. Tried with default c\+\+ on the system and was > getting the same type error. OS is OEL 8.5. > Here is the detailed output: > {noformat} > Installing package into ‘/usr/lib64/R/library’ > (as ‘lib’ is unspecified) > trying URL > 'http://**************************/prod/cran/src/contrib/arrow_9.0.0.tar.gz' > Content type 'application/octet-stream' length 4900968 bytes (4.7 MB) > ================================================== > downloaded 4.7 MB > * installing *source* package ‘arrow’ ... > ** package ‘arrow’ successfully unpacked and MD5 sums checked > ** using staged installation > *** Found local C++ source: 'tools/cpp' > *** Building libarrow from source > For build options and troubleshooting, see the install vignette: > https://cran.r-project.org/web/packages/arrow/vignettes/install.html > *** Building with MAKEFLAGS= -j2 > **** cmake: /bin/cmake > **** arrow with SOURCE_DIR='tools/cpp' BUILD_DIR='/tmp/rmt' > DEST_DIR='libarrow/arrow-9.0.0' CMAKE='/bin/cmake' EXTRA_CMAKE_FLAGS='' > CC='gcc -m64' CXX='g++ -m64 -std=gnu++11' LDFLAGS='-Wl,-z,relro -Wl,-z,now > -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ARROW_S3='OFF' ARROW_GCS='OFF' > ARROW_MIMALLOC='OFF' > ++ pwd > + : /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow > + : tools/cpp > + : /tmp/rmt > + : libarrow/arrow-9.0.0 > + : /bin/cmake > ++ cd tools/cpp > ++ pwd > + SOURCE_DIR=/tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp > ++ mkdir -p libarrow/arrow-9.0.0 > ++ cd libarrow/arrow-9.0.0 > ++ pwd > + DEST_DIR=/tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/libarrow/arrow-9.0.0 > + '[' '' '!=' '' ']' > + '[' '' = false ']' > + ARROW_DEFAULT_PARAM=OFF > + mkdir -p /tmp/rmt > + pushd /tmp/rmt > /tmp/rmt /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow > + /bin/cmake -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF > -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON > -DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=AUTO > -DAWSSDK_SOURCE= -DARROW_FILESYSTEM=ON -DARROW_GCS=OFF -DARROW_JEMALLOC=OFF > -DARROW_MIMALLOC=OFF -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_S3=OFF > -DARROW_WITH_BROTLI=OFF -DARROW_WITH_BZ2=OFF -DARROW_WITH_LZ4=ON > -DARROW_WITH_RE2=ON -DARROW_WITH_SNAPPY=ON -DARROW_WITH_UTF8PROC=ON > -DARROW_WITH_ZLIB=OFF -DARROW_WITH_ZSTD=OFF > -DARROW_VERBOSE_THIRDPARTY_BUILD=OFF -DCMAKE_BUILD_TYPE=Release > -DCMAKE_INSTALL_LIBDIR=lib > -DCMAKE_INSTALL_PREFIX=/tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/libarrow/arrow-9.0.0 > -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON > -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=OFF > -Dxsimd_SOURCE= -G 'Unix Makefiles' > /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp > -- Building using CMake version: 3.20.2 > -- The C compiler identification is GNU 11.2.1 > -- The CXX compiler identification is GNU 11.2.1 > -- Detecting C compiler ABI info > -- Detecting C compiler ABI info - failed > -- Check for working C compiler: /opt/rh/gcc-toolset-11/root/usr/bin/gcc > -- Check for working C compiler: /opt/rh/gcc-toolset-11/root/usr/bin/gcc - > works > -- Detecting C compile features > -- Detecting C compile features - done > -- Detecting CXX compiler ABI info > -- Detecting CXX compiler ABI info - failed > -- Check for working CXX compiler: /opt/rh/gcc-toolset-11/root/usr/bin/g++ > -- Check for working CXX compiler: /opt/rh/gcc-toolset-11/root/usr/bin/g++ - > works > -- Detecting CXX compile features > -- Detecting CXX compile features - done > -- Arrow version: 9.0.0 (full: '9.0.0') > -- Arrow SO version: 900 (full: 900.0.0) > -- clang-tidy 12 not found > -- clang-format 12 not found > -- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN) > -- infer not found > fatal: not a git repository (or any parent up to mount point /) > Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). > -- Found Python3: /bin/python3.6 (found version "3.6.8") found components: > Interpreter > -- Found cpplint executable at > /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp/build-support/cpplint.py > -- System processor: x86_64 > -- Performing Test CXX_SUPPORTS_SSE4_2 > -- Performing Test CXX_SUPPORTS_SSE4_2 - Success > -- Performing Test CXX_SUPPORTS_AVX2 > -- Performing Test CXX_SUPPORTS_AVX2 - Success > -- Performing Test CXX_SUPPORTS_AVX512 > -- Performing Test CXX_SUPPORTS_AVX512 - Success > -- Arrow build warning level: PRODUCTION > -- Using ld linker > -- Configured for RELEASE build (set with cmake > -DCMAKE_BUILD_TYPE={release,debug,...}) > -- Build Type: RELEASE > -- Performing Test CXX_LINKER_SUPPORTS_VERSION_SCRIPT > -- Performing Test CXX_LINKER_SUPPORTS_VERSION_SCRIPT - Success > -- Using AUTO approach to find dependencies > -- ARROW_ABSL_BUILD_VERSION: 20211102.0 > -- ARROW_ABSL_BUILD_SHA256_CHECKSUM: > dcf71b9cba8dc0ca9940c4b316a0c796be8fab42b070bb6b7cab62b48f0e66c4 > -- ARROW_AWSSDK_BUILD_VERSION: 1.8.133 > -- ARROW_AWSSDK_BUILD_SHA256_CHECKSUM: > d6c495bc06be5e21dac716571305d77437e7cfd62a2226b8fe48d9ab5785a8d6 > -- ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.1.12 > -- ARROW_AWS_CHECKSUMS_BUILD_SHA256_CHECKSUM: > 394723034b81cc7cd528401775bc7aca2b12c7471c92350c80a0e2fb9d2909fe > -- ARROW_AWS_C_COMMON_BUILD_VERSION: v0.6.9 > -- ARROW_AWS_C_COMMON_BUILD_SHA256_CHECKSUM: > 928a3e36f24d1ee46f9eec360ec5cebfe8b9b8994fe39d4fa74ff51aebb12717 > -- ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.1.5 > -- ARROW_AWS_C_EVENT_STREAM_BUILD_SHA256_CHECKSUM: > f1b423a487b5d6dca118bfc0d0c6cc596dc476b282258a3228e73a8f730422d4 > -- ARROW_BOOST_BUILD_VERSION: 1.75.0 > -- ARROW_BOOST_BUILD_SHA256_CHECKSUM: > 267e04a7c0bfe85daf796dedc789c3a27a76707e1c968f0a2a87bb96331e2b61 > -- ARROW_BROTLI_BUILD_VERSION: v1.0.9 > -- ARROW_BROTLI_BUILD_SHA256_CHECKSUM: > f9e8d81d0405ba66d181529af42a3354f838c939095ff99930da6aa9cdf6fe46 > -- ARROW_BZIP2_BUILD_VERSION: 1.0.8 > -- ARROW_BZIP2_BUILD_SHA256_CHECKSUM: > ab5a03176ee106d3f0fa90e381da478ddae405918153cca248e682cd0c4a2269 > -- ARROW_CARES_BUILD_VERSION: 1.17.2 > -- ARROW_CARES_BUILD_SHA256_CHECKSUM: > 4803c844ce20ce510ef0eb83f8ea41fa24ecaae9d280c468c582d2bb25b3913d > -- ARROW_CRC32C_BUILD_VERSION: 1.1.2 > -- ARROW_CRC32C_BUILD_SHA256_CHECKSUM: > ac07840513072b7fcebda6e821068aa04889018f24e10e46181068fb214d7e56 > -- ARROW_GBENCHMARK_BUILD_VERSION: v1.6.0 > -- ARROW_GBENCHMARK_BUILD_SHA256_CHECKSUM: > 1f71c72ce08d2c1310011ea6436b31e39ccab8c2db94186d26657d41747c85d6 > -- ARROW_GFLAGS_BUILD_VERSION: v2.2.2 > -- ARROW_GFLAGS_BUILD_SHA256_CHECKSUM: > 34af2f15cf7367513b352bdcd2493ab14ce43692d2dcd9dfc499492966c64dcf > -- ARROW_GLOG_BUILD_VERSION: v0.5.0 > -- ARROW_GLOG_BUILD_SHA256_CHECKSUM: > eede71f28371bf39aa69b45de23b329d37214016e2055269b3b5e7cfd40b59f5 > -- ARROW_GOOGLE_CLOUD_CPP_BUILD_VERSION: v1.42.0 > -- ARROW_GOOGLE_CLOUD_CPP_BUILD_SHA256_CHECKSUM: > c06ae9aededbb8aa217a6d2453754daa40b815f9a4004bc4f2d2d215c79828aa > -- ARROW_GRPC_BUILD_VERSION: v1.46.3 > -- ARROW_GRPC_BUILD_SHA256_CHECKSUM: > d6cbf22cb5007af71b61c6be316a79397469c58c82a942552a62e708bce60964 > -- ARROW_GTEST_BUILD_VERSION: 1.11.0 > -- ARROW_GTEST_BUILD_SHA256_CHECKSUM: > b4870bf121ff7795ba20d20bcdd8627b8e088f2d1dab299a031c1034eddc93d5 > -- ARROW_JEMALLOC_BUILD_VERSION: 5.3.0 > -- ARROW_JEMALLOC_BUILD_SHA256_CHECKSUM: > 2db82d1e7119df3e71b7640219b6dfe84789bc0537983c3b7ac4f7189aecfeaa > -- ARROW_LZ4_BUILD_VERSION: 8f61d8eb7c6979769a484cde8df61ff7c4c77765 > -- ARROW_LZ4_BUILD_SHA256_CHECKSUM: > 5b072d848f2f93fddb97e1143e22c1bd7fa19fc8431ee69e21758190a88125b4 > -- ARROW_MIMALLOC_BUILD_VERSION: v2.0.6 > -- ARROW_MIMALLOC_BUILD_SHA256_CHECKSUM: > 9f05c94cc2b017ed13698834ac2a3567b6339a8bde27640df5a1581d49d05ce5 > -- ARROW_NLOHMANN_JSON_BUILD_VERSION: v3.10.5 > -- ARROW_NLOHMANN_JSON_BUILD_SHA256_CHECKSUM: > 5daca6ca216495edf89d167f808d1d03c4a4d929cef7da5e10f135ae1540c7e4 > -- ARROW_OPENTELEMETRY_BUILD_VERSION: v1.4.1 > -- ARROW_OPENTELEMETRY_BUILD_SHA256_CHECKSUM: > 301b1ab74a664723560f46c29f228360aff1e2d63e930b963755ea077ae67524 > -- ARROW_OPENTELEMETRY_PROTO_BUILD_VERSION: v0.17.0 > -- ARROW_OPENTELEMETRY_PROTO_BUILD_SHA256_CHECKSUM: > f269fbcb30e17b03caa1decd231ce826e59d7651c0f71c3b28eb5140b4bb5412 > -- ARROW_ORC_BUILD_VERSION: 1.7.5 > -- ARROW_ORC_BUILD_SHA256_CHECKSUM: > b90cae5853e3ea0e5bf64e3883d09d871ec280536e0bb2cc52d08f79f0be0010 > -- ARROW_PROTOBUF_BUILD_VERSION: v21.3 > -- ARROW_PROTOBUF_BUILD_SHA256_CHECKSUM: > 2f723218f6cb709ae4cdc4fb5ed56a5951fc5d466f0128ce4c946b8c78c8c49f > -- ARROW_RAPIDJSON_BUILD_VERSION: 232389d4f1012dddec4ef84861face2d2ba85709 > -- ARROW_RAPIDJSON_BUILD_SHA256_CHECKSUM: > b9290a9a6d444c8e049bd589ab804e0ccf2b05dc5984a19ed5ae75d090064806 > -- ARROW_RE2_BUILD_VERSION: 2022-06-01 > -- ARROW_RE2_BUILD_SHA256_CHECKSUM: > f89c61410a072e5cbcf8c27e3a778da7d6fd2f2b5b1445cd4f4508bee946ab0f > -- ARROW_SNAPPY_BUILD_VERSION: 1.1.9 > -- ARROW_SNAPPY_BUILD_SHA256_CHECKSUM: > 75c1fbb3d618dd3a0483bff0e26d0a92b495bbe5059c8b4f1c962b478b6e06e7 > -- ARROW_SNAPPY_OLD_BUILD_VERSION: 1.1.8 > -- ARROW_SNAPPY_OLD_BUILD_SHA256_CHECKSUM: > 16b677f07832a612b0836178db7f374e414f94657c138e6993cbfc5dcc58651f > -- ARROW_SUBSTRAIT_BUILD_VERSION: v0.6.0 > -- ARROW_SUBSTRAIT_BUILD_SHA256_CHECKSUM: > 7b8583b9684477e9027f417bbfb4febb8acfeb01923dcaa7cf0fd3f921d69c88 > -- ARROW_THRIFT_BUILD_VERSION: 0.16.0 > -- ARROW_THRIFT_BUILD_SHA256_CHECKSUM: > f460b5c1ca30d8918ff95ea3eb6291b3951cf518553566088f3f2be8981f6209 > -- ARROW_UCX_BUILD_VERSION: 1.12.1 > -- ARROW_UCX_BUILD_SHA256_CHECKSUM: > 9bef31aed0e28bf1973d28d74d9ac4f8926c43ca3b7010bd22a084e164e31b71 > -- ARROW_UTF8PROC_BUILD_VERSION: v2.7.0 > -- ARROW_UTF8PROC_BUILD_SHA256_CHECKSUM: > 4bb121e297293c0fd55f08f83afab6d35d48f0af4ecc07523ad8ec99aa2b12a1 > -- ARROW_XSIMD_BUILD_VERSION: 8.1.0 > -- ARROW_XSIMD_BUILD_SHA256_CHECKSUM: > d52551360d37709675237d2a0418e28f70995b5b7cdad7c674626bcfbbf48328 > -- ARROW_ZLIB_BUILD_VERSION: 1.2.12 > -- ARROW_ZLIB_BUILD_SHA256_CHECKSUM: > 91844808532e5ce316b3c010929493c0244f3d37593afd6de04f71821d5136d9 > -- ARROW_ZSTD_BUILD_VERSION: v1.5.2 > -- ARROW_ZSTD_BUILD_SHA256_CHECKSUM: > f7de13462f7a82c29ab865820149e778cbfe01087b3a55b5332707abf9db4a6e > -- Looking for pthread.h > -- Looking for pthread.h - found > -- Performing Test CMAKE_HAVE_LIBC_PTHREAD > -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed > -- Check if compiler accepts -pthread > -- Check if compiler accepts -pthread - yes > -- Found Threads: TRUE > -- Looking for _M_ARM64 > -- Looking for _M_ARM64 - not found > -- Looking for __SIZEOF_INT128__ > -- Looking for __SIZEOF_INT128__ - found > -- Found Boost: /usr/include (found suitable version "1.66.0", minimum > required is "1.58") > -- Boost include dir: /usr/include > CMake Warning at cmake_modules/FindSnappyAlt.cmake:25 (find_package): > By not providing "FindSnappy.cmake" in CMAKE_MODULE_PATH this project has > asked CMake to find a package configuration file provided by "Snappy", but > CMake did not find one. > Could not find a package configuration file provided by "Snappy" with any > of the following names: > SnappyConfig.cmake > snappy-config.cmake > Add the installation prefix of "Snappy" to CMAKE_PREFIX_PATH or set > "Snappy_DIR" to a directory containing one of the above files. If "Snappy" > provides a separate development package or SDK, be sure it has been > installed. > Call Stack (most recent call first): > cmake_modules/ThirdpartyToolchain.cmake:257 (find_package) > cmake_modules/ThirdpartyToolchain.cmake:1137 (resolve_dependency) > CMakeLists.txt:575 (include) > -- Could NOT find SnappyAlt (missing: Snappy_LIB Snappy_INCLUDE_DIR) > -- Building snappy from source > -- Building without OpenSSL support. Minimum OpenSSL version 1.0.2 required. > -- Checking for module 'thrift' > -- Package 'thrift', required by 'virtual:world', not found > -- Could NOT find Thrift: Found unsuitable version "", but required is at > least "0.11.0" (found THRIFT_LIB-NOTFOUND) > -- Building Apache Thrift from source > CMake Warning at cmake_modules/FindRapidJSONAlt.cmake:25 (find_package): > By not providing "FindRapidJSON.cmake" in CMAKE_MODULE_PATH this project > has asked CMake to find a package configuration file provided by > "RapidJSON", but CMake did not find one. > Could not find a package configuration file provided by "RapidJSON" > (requested version 1.1.0) with any of the following names: > RapidJSONConfig.cmake > rapidjson-config.cmake > Add the installation prefix of "RapidJSON" to CMAKE_PREFIX_PATH or set > "RapidJSON_DIR" to a directory containing one of the above files. If > "RapidJSON" provides a separate development package or SDK, be sure it has > been installed. > Call Stack (most recent call first): > cmake_modules/ThirdpartyToolchain.cmake:257 (find_package) > cmake_modules/ThirdpartyToolchain.cmake:2189 (resolve_dependency) > CMakeLists.txt:575 (include) > -- Could NOT find RapidJSONAlt (missing: RAPIDJSON_INCLUDE_DIR) (Required is > at least version "1.1.0") > -- Building RapidJSON from source > CMake Warning at cmake_modules/ThirdpartyToolchain.cmake:257 (find_package): > By not providing "Findxsimd.cmake" in CMAKE_MODULE_PATH this project has > asked CMake to find a package configuration file provided by "xsimd", but > CMake did not find one. > Could not find a package configuration file provided by "xsimd" (requested > version 8.1.0) with any of the following names: > xsimdConfig.cmake > xsimd-config.cmake > Add the installation prefix of "xsimd" to CMAKE_PREFIX_PATH or set > "xsimd_DIR" to a directory containing one of the above files. If "xsimd" > provides a separate development package or SDK, be sure it has been > installed. > Call Stack (most recent call first): > cmake_modules/ThirdpartyToolchain.cmake:2246 (resolve_dependency) > CMakeLists.txt:575 (include) > -- Building xsimd from source > CMake Warning at cmake_modules/Findlz4Alt.cmake:25 (find_package): > By not providing "Findlz4.cmake" in CMAKE_MODULE_PATH this project has > asked CMake to find a package configuration file provided by "lz4", but > CMake did not find one. > Could not find a package configuration file provided by "lz4" with any of > the following names: > lz4Config.cmake > lz4-config.cmake > Add the installation prefix of "lz4" to CMAKE_PREFIX_PATH or set "lz4_DIR" > to a directory containing one of the above files. If "lz4" provides a > separate development package or SDK, be sure it has been installed. > Call Stack (most recent call first): > cmake_modules/ThirdpartyToolchain.cmake:257 (find_package) > cmake_modules/ThirdpartyToolchain.cmake:2354 (resolve_dependency) > CMakeLists.txt:575 (include) > -- Checking for module 'liblz4' > -- Package 'liblz4', required by 'virtual:world', not found > -- Could NOT find lz4Alt (missing: LZ4_LIB LZ4_INCLUDE_DIR) > -- Building lz4 from source > CMake Warning at cmake_modules/Findre2Alt.cmake:25 (find_package): > By not providing "Findre2.cmake" in CMAKE_MODULE_PATH this project has > asked CMake to find a package configuration file provided by "re2", but > CMake did not find one. > Could not find a package configuration file provided by "re2" with any of > the following names: > re2Config.cmake > re2-config.cmake > Add the installation prefix of "re2" to CMAKE_PREFIX_PATH or set "re2_DIR" > to a directory containing one of the above files. If "re2" provides a > separate development package or SDK, be sure it has been installed. > Call Stack (most recent call first): > cmake_modules/ThirdpartyToolchain.cmake:257 (find_package) > cmake_modules/ThirdpartyToolchain.cmake:2483 (resolve_dependency) > CMakeLists.txt:575 (include) > -- Checking for module 're2' > -- Package 're2', required by 'virtual:world', not found > -- Could NOT find re2Alt (missing: RE2_LIB RE2_INCLUDE_DIR) > -- Building RE2 from source > -- Could NOT find utf8proc: Found unsuitable version "2.1.1", but required is > at least "2.2.0" (found /usr/lib64/libutf8proc.so) > -- Building utf8proc from source > -- Found hdfs.h at: > /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp/thirdparty/hadoop/include/hdfs.h > -- All bundled static libraries: > Snappy::snappy-static;thrift::thrift;lz4::lz4;re2::re2;utf8proc::utf8proc > -- CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2 > -- CMAKE_CXX_FLAGS: -Wno-noexcept-type -fdiagnostics-color=always -O3 > -DNDEBUG -Wall -fno-semantic-interposition -msse4.2 > -- Looking for backtrace > -- Looking for backtrace - found > -- backtrace facility detected in default set of libraries > -- Found Backtrace: /usr/include > -- Creating bundled static library target arrow_bundled_dependencies at > /tmp/rmt/release/libarrow_bundled_dependencies.a > -- --------------------------------------------------------------------- > -- Arrow version: 9.0.0 > -- > -- Build configuration summary: > -- Generator: Unix Makefiles > -- Build type: RELEASE > -- Source directory: /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp > -- Install prefix: > /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/libarrow/arrow-9.0.0 > -- > -- Compile and link options: > -- > -- ARROW_CXXFLAGS="" [default=""] > -- Compiler flags to append when compiling Arrow > -- ARROW_BUILD_STATIC=ON [default=ON] > -- Build static libraries > -- ARROW_BUILD_SHARED=OFF [default=ON] > -- Build shared libraries > -- ARROW_PACKAGE_KIND="" [default=""] > -- Arbitrary string that identifies the kind of package > -- (for informational purposes) > -- ARROW_GIT_ID="" [default=""] > -- The Arrow git commit id (if any) > -- ARROW_GIT_DESCRIPTION="" [default=""] > -- The Arrow git commit description (if any) > -- ARROW_NO_DEPRECATED_API=OFF [default=OFF] > -- Exclude deprecated APIs from build > -- ARROW_POSITION_INDEPENDENT_CODE=ON [default=ON] > -- Whether to create position-independent target > -- ARROW_USE_CCACHE=ON [default=ON] > -- Use ccache when compiling (if available) > -- ARROW_USE_LD_GOLD=OFF [default=OFF] > -- Use ld.gold for linking on Linux (if available) > -- ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF] > -- Use precompiled headers when compiling > -- ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512|NEON|DEFAULT] > -- Compile-time SIMD optimization level > -- ARROW_RUNTIME_SIMD_LEVEL=MAX [default=NONE|SSE4_2|AVX2|AVX512|MAX] > -- Max runtime SIMD optimization level > -- ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto] > -- Arm64 arch and extensions > -- ARROW_ALTIVEC=ON [default=ON] > -- Build with Altivec if compiler has support > -- ARROW_RPATH_ORIGIN=OFF [default=OFF] > -- Build Arrow libraries with RATH set to $ORIGIN > -- ARROW_INSTALL_NAME_RPATH=ON [default=ON] > -- Build Arrow libraries with install_name set to @rpath > -- ARROW_GGDB_DEBUG=ON [default=ON] > -- Pass -ggdb flag to debug builds > -- > -- Test and benchmark options: > -- > -- ARROW_BUILD_EXAMPLES=OFF [default=OFF] > -- Build the Arrow examples > -- ARROW_BUILD_TESTS=OFF [default=OFF] > -- Build the Arrow googletest unit tests > -- ARROW_ENABLE_TIMING_TESTS=ON [default=ON] > -- Enable timing-sensitive tests > -- ARROW_BUILD_INTEGRATION=OFF [default=OFF] > -- Build the Arrow integration test executables > -- ARROW_BUILD_BENCHMARKS=OFF [default=OFF] > -- Build the Arrow micro benchmarks > -- ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF] > -- Build the Arrow micro reference benchmarks > -- ARROW_BUILD_OPENMP_BENCHMARKS=OFF [default=OFF] > -- Build the Arrow benchmarks that rely on OpenMP > -- ARROW_BUILD_DETAILED_BENCHMARKS=OFF [default=OFF] > -- Build benchmarks that do a longer exploration of performance > -- ARROW_TEST_LINKAGE=static [default=shared|static] > -- Linkage of Arrow libraries with unit tests executables. > -- ARROW_FUZZING=OFF [default=OFF] > -- Build Arrow Fuzzing executables > -- ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF] > -- Enable unit tests which use large memory > -- > -- Lint options: > -- > -- ARROW_ONLY_LINT=OFF [default=OFF] > -- Only define the lint and check-format targets > -- ARROW_VERBOSE_LINT=OFF [default=OFF] > -- If off, 'quiet' flags will be passed to linting tools > -- ARROW_GENERATE_COVERAGE=OFF [default=OFF] > -- Build with C++ code coverage enabled > -- > -- Checks options: > -- > -- ARROW_TEST_MEMCHECK=OFF [default=OFF] > -- Run the test suite using valgrind --tool=memcheck > -- ARROW_USE_ASAN=OFF [default=OFF] > -- Enable Address Sanitizer checks > -- ARROW_USE_TSAN=OFF [default=OFF] > -- Enable Thread Sanitizer checks > -- ARROW_USE_UBSAN=OFF [default=OFF] > -- Enable Undefined Behavior sanitizer checks > -- > -- Project component options: > -- > -- ARROW_BUILD_UTILITIES=OFF [default=OFF] > -- Build Arrow commandline utilities > -- ARROW_COMPUTE=ON [default=OFF] > -- Build the Arrow Compute Modules > -- ARROW_CSV=ON [default=OFF] > -- Build the Arrow CSV Parser Module > -- ARROW_CUDA=OFF [default=OFF] > -- Build the Arrow CUDA extensions (requires CUDA toolkit) > -- ARROW_DATASET=ON [default=OFF] > -- Build the Arrow Dataset Modules > -- ARROW_SUBSTRAIT=OFF [default=OFF] > -- Build the Arrow Substrait Consumer Module > -- ARROW_FILESYSTEM=ON [default=OFF] > -- Build the Arrow Filesystem Layer > -- ARROW_FLIGHT=OFF [default=OFF] > -- Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers) > -- ARROW_FLIGHT_SQL=OFF [default=OFF] > -- Build the Arrow Flight SQL extension > -- ARROW_GANDIVA=OFF [default=OFF] > -- Build the Gandiva libraries > -- ARROW_GCS=OFF [default=OFF] > -- Build Arrow with GCS support (requires the GCloud SDK for C++) > -- ARROW_HDFS=OFF [default=OFF] > -- Build the Arrow HDFS bridge > -- ARROW_IPC=ON [default=ON] > -- Build the Arrow IPC extensions > -- ARROW_JEMALLOC=OFF [default=ON] > -- Build the Arrow jemalloc-based allocator > -- ARROW_JNI=OFF [default=OFF] > -- Build the Arrow JNI lib > -- ARROW_JSON=ON [default=OFF] > -- Build Arrow with JSON support (requires RapidJSON) > -- ARROW_MIMALLOC=OFF [default=OFF] > -- Build the Arrow mimalloc-based allocator > -- ARROW_PARQUET=ON [default=OFF] > -- Build the Parquet libraries > -- ARROW_ORC=OFF [default=OFF] > -- Build the Arrow ORC adapter > -- ARROW_PLASMA=OFF [default=OFF] > -- Build the plasma object store along with Arrow > -- ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF] > -- Build the plasma object store java client > -- ARROW_PYTHON=OFF [default=OFF] > -- Build the Arrow CPython extensions > -- ARROW_S3=OFF [default=OFF] > -- Build Arrow with S3 support (requires the AWS SDK for C++) > -- ARROW_SKYHOOK=OFF [default=OFF] > -- Build the Skyhook libraries > -- ARROW_TENSORFLOW=OFF [default=OFF] > -- Build Arrow with TensorFlow support enabled > -- ARROW_TESTING=OFF [default=OFF] > -- Build the Arrow testing libraries > -- > -- Thirdparty toolchain options: > -- > -- ARROW_DEPENDENCY_SOURCE=AUTO > [default=AUTO|BUNDLED|SYSTEM|CONDA|VCPKG|BREW] > -- Method to use for acquiring arrow's build dependencies > -- ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF] > -- Show output from ExternalProjects rather than just logging to files > -- ARROW_DEPENDENCY_USE_SHARED=ON [default=ON] > -- Link to shared libraries > -- ARROW_BOOST_USE_SHARED=OFF [default=ON] > -- Rely on Boost shared libraries where relevant > -- ARROW_BROTLI_USE_SHARED=ON [default=ON] > -- Rely on Brotli shared libraries where relevant > -- ARROW_BZ2_USE_SHARED=ON [default=ON] > -- Rely on Bz2 shared libraries where relevant > -- ARROW_GFLAGS_USE_SHARED=ON [default=ON] > -- Rely on GFlags shared libraries where relevant > -- ARROW_GRPC_USE_SHARED=ON [default=ON] > -- Rely on gRPC shared libraries where relevant > -- ARROW_JEMALLOC_USE_SHARED=ON [default=ON] > -- Rely on jemalloc shared libraries where relevant > -- ARROW_LZ4_USE_SHARED=ON [default=ON] > -- Rely on lz4 shared libraries where relevant > -- ARROW_OPENSSL_USE_SHARED=ON [default=ON] > -- Rely on OpenSSL shared libraries where relevant > -- ARROW_PROTOBUF_USE_SHARED=ON [default=ON] > -- Rely on Protocol Buffers shared libraries where relevant > -- ARROW_SNAPPY_USE_SHARED=ON [default=ON] > -- Rely on snappy shared libraries where relevant > -- ARROW_THRIFT_USE_SHARED=ON [default=ON] > -- Rely on thrift shared libraries where relevant > -- ARROW_UTF8PROC_USE_SHARED=ON [default=ON] > -- Rely on utf8proc shared libraries where relevant > -- ARROW_ZSTD_USE_SHARED=ON [default=ON] > -- Rely on zstd shared libraries where relevant > -- ARROW_USE_GLOG=OFF [default=OFF] > -- Build libraries with glog support for pluggable logging > -- ARROW_WITH_BACKTRACE=ON [default=ON] > -- Build with backtrace support > -- ARROW_WITH_OPENTELEMETRY=OFF [default=OFF] > -- Build libraries with OpenTelemetry support for distributed tracing > -- ARROW_WITH_BROTLI=OFF [default=OFF] > -- Build with Brotli compression > -- ARROW_WITH_BZ2=OFF [default=OFF] > -- Build with BZ2 compression > -- ARROW_WITH_LZ4=ON [default=OFF] > -- Build with lz4 compression > -- ARROW_WITH_SNAPPY=ON [default=OFF] > -- Build with Snappy compression > -- ARROW_WITH_ZLIB=OFF [default=OFF] > -- Build with zlib compression > -- ARROW_WITH_ZSTD=OFF [default=OFF] > -- Build with zstd compression > -- ARROW_WITH_UCX=OFF [default=OFF] > -- Build with UCX transport for Arrow Flight > -- (only used if ARROW_FLIGHT is ON) > -- ARROW_WITH_UTF8PROC=ON [default=ON] > -- Build with support for Unicode properties using the utf8proc library > -- (only used if ARROW_COMPUTE is ON or ARROW_GANDIVA is ON) > -- ARROW_WITH_RE2=ON [default=ON] > -- Build with support for regular expressions using the re2 library > -- (only used if ARROW_COMPUTE or ARROW_GANDIVA is ON) > -- > -- Parquet options: > -- > -- PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF] > -- Depend only on Thirdparty headers to build libparquet. > -- Always OFF if building binaries > -- PARQUET_BUILD_EXECUTABLES=OFF [default=OFF] > -- Build the Parquet executable CLI tools. Requires static libraries to > be built. > -- PARQUET_BUILD_EXAMPLES=OFF [default=OFF] > -- Build the Parquet examples. Requires static libraries to be built. > -- PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF] > -- Build support for encryption. Fail if OpenSSL is not found > -- > -- Gandiva options: > -- > -- ARROW_GANDIVA_JAVA=OFF [default=OFF] > -- Build the Gandiva JNI wrappers > -- ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF] > -- Include -static-libstdc++ -static-libgcc when linking with > -- Gandiva static libraries > -- ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""] > -- Compiler flags to append when pre-compiling Gandiva operations > -- > -- Advanced developer options: > -- > -- ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF] > -- Compile with extra error context (line numbers, code) > -- ARROW_OPTIONAL_INSTALL=OFF [default=OFF] > -- If enabled install ONLY targets that have already been built. Please > be > -- advised that if this is enabled 'install' will fail silently on > components > -- that have not been built > -- Outputting build configuration summary to /tmp/rmt/cmake_summary.json > -- Configuring done > -- Generating done > -- Build files have been written to: /tmp/rmt > + /bin/cmake --build . --target install > [ 0%] Creating directories for 'snappy_ep' > [ 1%] Creating directories for 'utf8proc_ep' > [ 1%] Performing download step (download, verify and extract) for 'snappy_ep' > [ 1%] Performing download step (download, verify and extract) for > 'utf8proc_ep' > -- utf8proc_ep download command succeeded. See also > /tmp/rmt/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-download-*.log > [ 1%] No update step for 'utf8proc_ep' > -- snappy_ep download command succeeded. See also > /tmp/rmt/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-download-*.log > [ 1%] No patch step for 'utf8proc_ep' > [ 1%] No update step for 'snappy_ep' > [ 2%] Performing configure step for 'utf8proc_ep' > [ 2%] No patch step for 'snappy_ep' > [ 2%] Performing configure step for 'snappy_ep' > -- utf8proc_ep configure command succeeded. See also > /tmp/rmt/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-configure-*.log > [ 2%] Performing build step for 'utf8proc_ep' > -- utf8proc_ep build command succeeded. See also > /tmp/rmt/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-build-*.log > [ 2%] Performing install step for 'utf8proc_ep' > -- utf8proc_ep install command succeeded. See also > /tmp/rmt/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-install-*.log > [ 2%] Completed 'utf8proc_ep' > [ 2%] Built target utf8proc_ep > [ 2%] Creating directories for 'thrift_ep' > [ 3%] Performing download step (download, verify and extract) for 'thrift_ep' > -- thrift_ep download command succeeded. See also > /tmp/rmt/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-download-*.log > [ 4%] No update step for 'thrift_ep' > [ 4%] No patch step for 'thrift_ep' > [ 4%] Performing configure step for 'thrift_ep' > -- snappy_ep configure command succeeded. See also > /tmp/rmt/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-configure-*.log > [ 5%] Performing build step for 'snappy_ep' > -- snappy_ep build command succeeded. See also > /tmp/rmt/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-build-*.log > [ 6%] Performing install step for 'snappy_ep' > -- snappy_ep install command succeeded. See also > /tmp/rmt/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-install-*.log > [ 6%] Completed 'snappy_ep' > [ 6%] Built target snappy_ep > [ 6%] Creating directories for 'rapidjson_ep' > [ 7%] Performing download step (download, verify and extract) for > 'rapidjson_ep' > -- rapidjson_ep download command succeeded. See also > /tmp/rmt/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log > [ 8%] No update step for 'rapidjson_ep' > [ 8%] No patch step for 'rapidjson_ep' > [ 8%] Performing configure step for 'rapidjson_ep' > -- rapidjson_ep configure command succeeded. See also > /tmp/rmt/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log > [ 8%] Performing build step for 'rapidjson_ep' > -- rapidjson_ep build command succeeded. See also > /tmp/rmt/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log > [ 8%] Performing install step for 'rapidjson_ep' > -- rapidjson_ep install command succeeded. See also > /tmp/rmt/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log > [ 9%] Completed 'rapidjson_ep' > [ 9%] Built target rapidjson_ep > [ 9%] Creating directories for 'lz4_ep' > [ 9%] Performing download step (download, verify and extract) for 'lz4_ep' > -- lz4_ep download command succeeded. See also > /tmp/rmt/lz4_ep-prefix/src/lz4_ep-stamp/lz4_ep-download-*.log > [ 9%] Performing update step for 'lz4_ep' > [ 10%] No patch step for 'lz4_ep' > [ 11%] No configure step for 'lz4_ep' > [ 11%] Performing build step for 'lz4_ep' > -- thrift_ep configure command succeeded. See also > /tmp/rmt/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure-*.log > [ 11%] Performing build step for 'thrift_ep' > -- lz4_ep build command succeeded. See also > /tmp/rmt/lz4_ep-prefix/src/lz4_ep-stamp/lz4_ep-build-*.log > [ 11%] No install step for 'lz4_ep' > [ 11%] Completed 'lz4_ep' > [ 11%] Built target lz4_ep > [ 11%] Creating directories for 'xsimd_ep' > [ 11%] Performing download step (download, verify and extract) for 'xsimd_ep' > -- xsimd_ep download command succeeded. See also > /tmp/rmt/src/xsimd_ep-stamp/xsimd_ep-download-*.log > [ 12%] No update step for 'xsimd_ep' > [ 12%] No patch step for 'xsimd_ep' > [ 12%] Performing configure step for 'xsimd_ep' > -- xsimd_ep configure command succeeded. See also > /tmp/rmt/src/xsimd_ep-stamp/xsimd_ep-configure-*.log > [ 13%] Performing build step for 'xsimd_ep' > -- xsimd_ep build command succeeded. See also > /tmp/rmt/src/xsimd_ep-stamp/xsimd_ep-build-*.log > [ 14%] Performing install step for 'xsimd_ep' > -- xsimd_ep install command succeeded. See also > /tmp/rmt/src/xsimd_ep-stamp/xsimd_ep-install-*.log > [ 14%] Completed 'xsimd_ep' > [ 14%] Built target xsimd_ep > [ 14%] Creating directories for 're2_ep' > [ 14%] Performing download step (download, verify and extract) for 're2_ep' > -- re2_ep download command succeeded. See also > /tmp/rmt/re2_ep-prefix/src/re2_ep-stamp/re2_ep-download-*.log > [ 14%] No update step for 're2_ep' > [ 15%] No patch step for 're2_ep' > [ 16%] Performing configure step for 're2_ep' > -- re2_ep configure command succeeded. See also > /tmp/rmt/re2_ep-prefix/src/re2_ep-stamp/re2_ep-configure-*.log > [ 16%] Performing build step for 're2_ep' > -- thrift_ep build command succeeded. See also > /tmp/rmt/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-build-*.log > [ 16%] Performing install step for 'thrift_ep' > -- thrift_ep install command succeeded. See also > /tmp/rmt/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-install-*.log > [ 17%] Completed 'thrift_ep' > [ 17%] Built target thrift_ep > -- re2_ep build command succeeded. See also > /tmp/rmt/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-*.log > [ 17%] Performing install step for 're2_ep' > -- re2_ep install command succeeded. See also > /tmp/rmt/re2_ep-prefix/src/re2_ep-stamp/re2_ep-install-*.log > [ 17%] Completed 're2_ep' > [ 17%] Built target re2_ep > [ 17%] Built target toolchain > [ 17%] Bundling /tmp/rmt/release/libarrow_bundled_dependencies.a > [ 17%] Built target arrow_dependencies > [ 18%] Building CXX object > src/arrow/CMakeFiles/arrow_objlib.dir/array/array_base.cc.o > In file included from > /opt/rh/gcc-toolset-11/root/usr/include/c++/11/ext/string_conversions.h:41, > from > /opt/rh/gcc-toolset-11/root/usr/include/c++/11/bits/basic_string.h:6608, > from > /opt/rh/gcc-toolset-11/root/usr/include/c++/11/string:55, > from > /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp/src/arrow/array/array_base.h:23, > from > /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp/src/arrow/array/array_base.cc:18: > /opt/rh/gcc-toolset-11/root/usr/include/c++/11/cstdlib:75:15: fatal error: > stdlib.h: No such file or directory > 75 | #include_next <stdlib.h> > | ^~~~~~~~~~ > compilation terminated. > make[2]: *** [src/arrow/CMakeFiles/arrow_objlib.dir/build.make:76: > src/arrow/CMakeFiles/arrow_objlib.dir/array/array_base.cc.o] Error 1 > make[1]: *** [CMakeFiles/Makefile2:1361: > src/arrow/CMakeFiles/arrow_objlib.dir/all] Error 2 > make[1]: *** Waiting for unfinished jobs.... > [ 18%] Built target arrow_bundled_dependencies > gmake: *** [Makefile:146: all] Error 2 > **** Error building Arrow C++. > ------------------------- NOTE --------------------------- > There was an issue preparing the Arrow C++ libraries. > See https://arrow.apache.org/docs/r/articles/install.html > --------------------------------------------------------- > ERROR: configuration failed for package ‘arrow’ > * removing ‘/usr/lib64/R/library/arrow’ > {noformat} -- This message was sent by Atlassian Jira (v8.20.10#820010)