> I've only seen a check in on jmol.javafiles.... is that right?
> Otherwise, what changes did you need to make?
That is correct. I added cdk.io.ReaderFactory + some of the readers to
jmol.javafiles. But I didn't know what readers we needed, and I did not
add them all.

At one point I suspected that some of my problems were related to not
having all the readers. I wondered if run-time errors were being thrown
within the CDK code. But then I wondered whether or not files were
implicitly being included, even though they are not in jmol.javafiles (as
with jmol/applet.classes).

Can you give me a very brief explanation about how jmol.javafiles works?

All the exception handling in the CDK code prevents you from seeing what
is going on. If there are exceptions being thrown then I have no idea what
is going wrong.

Where does the CDK logging go when we are running Jmol?


>> ...
> I am not sure what all this means...
ha ha
Given that it was 2:45 in the morning that is not surprising.

Don't worry about it.


>> I suggest that you not work on the jmol app. Rather, I think you
>> should move the IO classes over to cdk. For example, one problem I
>> found is that the MDLReader in cdk does not recognize the .mol files
>> in the same way that Jmol does.
>
> Moving the IO classes will take some time... but all the principle
> classes are in CDK... most of them are dummy at this moment though...
As long as I can read one class then I will be fine.


>> I will work on Jmol tomorrow nite. If you can get the cdk IO working
>> then I think I can get Jmol to work with CDK IO tomorrow nite ...
>> certainly over the weekend.
>
> To be able to get it working, I need to know what problems you were
> having... can you give me some more details on it.... compile problems,
> or run time  problems... ?
I will have more information for you on Monday.

Miguel

>
> Egon


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