I sat down yesterday with intensions of getting Jmol to work better with the CDK libraries. Per my previous message, I ran into some difficulties. Thanks for the responses.
In addition to the class hierarchy 'impedence mismatch' between jmol and cdk, there is still a problem with CDK and the atom attributes. That is, the vdw/covalent radii and color are not being assigned by cdk. This problem was fixed in CdkJmolModelAdapter for the app, but still doesn't work for the applet. Presumably there is a problem locating the appropriate .txt file ... this has been a recurring problem. Since I could not work on the cdk stuff, I decided to take a different tack. I switched the applet to use a SimpleModelAdapter which only reads .xyz, .mol, and .pdb files. The result was an applet which was significantly smaller. Previously the applet was >650K ... the reduced applet is 256K. For web-based applications where end-users will need to download the applet this 400K is a tremendous difference. We need to talk about this some more to see what can be done. Otherwise, I will feel compelled to argue for splitting the applet into two jars so that people who are running simple applications will not have such a heavy cost in download time. Miguel ------------------------------------------------------- This sf.net email is sponsored by:ThinkGeek Welcome to geek heaven. http://thinkgeek.com/sf _______________________________________________ Jmol-developers mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-developers
