Dave wrote: > 1e8a.pdb still forms those strange spider webs - the atoms at the centre > of the 'webs' is a hetero CA 705,706.
Dave, Uhh ... I am not seeing any spider webs ... and I think that is the way it is supposed to be :-) The calcium hetatoms each have 6 bonds, but the Jmol bonding code is not putting them there ... they are there because there are explicit CONECT records in the .pdb file CONECT 150 705 CONECT 174 705 CONECT 187 705 CONECT 216 705 CONECT 254 705 CONECT 255 705 CONECT 493 706 CONECT 506 706 CONECT 523 706 CONECT 537 706 CONECT 585 706 CONECT 586 706 CONECT 705 174 187 216 150 255 254 1587 CONECT 706 523 585 506 586 493 537 1583 (Separate, these last two CONECT records are 'out of spec'. My reading of the file format specification says that you cannot have more than 4 covalent bonds in a single CONECT record. I will send a separate message to the PDB asking about this.) Miguel ------------------------------------------------------- This SF.Net email is sponsored by: SourceForge.net Broadband Sign-up now for SourceForge Broadband and get the fastest 6.0/768 connection for only $19.95/mo for the first 3 months! http://ads.osdn.com/?ad_id=2562&alloc_id=6184&op=click _______________________________________________ Jmol-developers mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-developers
