Bugs item #1192487, was opened at 2005-04-29 17:32
Message generated for change (Comment added) made by nicove
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Category: None
Group: CVS
Status: Open
Resolution: None
Priority: 5
Submitted By: Nicolas (nicove)
Assigned to: Nobody/Anonymous (nobody)
Summary: NullPointerException in Monomer.scanForOffsets
Initial Comment:
I already posted the problem in the Jmol developers list.
I don't know what to do for this problem.
The file causing problem is in Jmol-web:
fah/projects/p2003.xyz.gz
FileManager.openFile(../fah/projects/p2003.xyz.gz)
SmarterJmolAdapter:The Resolver thinks:FoldingXyz
openFile(../fah/projects/p2003.xyz.gz) 2804 ms
Exception in thread "Thread-14"
java.lang.NullPointerException
at org.jmol.viewer.Monomer.scanForOffsets
(Monomer.java:81)
at
org.jmol.viewer.AminoMonomer.validateAndAllocate
(AminoMonomer.java:46)
at
org.jmol.viewer.Frame.distinguishAndPropogateGroup
(Frame.java:434)
at org.jmol.viewer.Frame.finalizeGroupBuild
(Frame.java:374)
at org.jmol.viewer.Frame.<init>
(Frame.java:192)
at org.jmol.viewer.ModelManager.setClientFile
(ModelManager.java:73)
at org.jmol.viewer.Viewer.openClientFile
(Viewer.java:1026)
at org.jmol.viewer.Viewer.getOpenFileError1
(Viewer.java:999)
at org.jmol.viewer.Viewer.getOpenFileError
(Viewer.java:984)
at org.jmol.viewer.Eval.load(Eval.java:1651)
at
org.jmol.viewer.Eval.instructionDispatchLoop
(Eval.java:351)
at org.jmol.viewer.Eval.run(Eval.java:291)
at java.lang.Thread.run(Unknown Source)
----------------------------------------------------------------------
>Comment By: Nicolas (nicove)
Date: 2006-03-09 07:24
Message:
Logged In: YES
user_id=1096197
I have it on other files, same execption.
The files are in Jmol-web/source/docs/fah/projects, it's
p1485.xyz.gz, p1486.xyz.gz.
I don't understand what's the problem :(
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