Bugs item #1814039, was opened at 2007-10-15 17:43 Message generated for change (Tracker Item Submitted) made by Item Submitter You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1814039&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Rolf Huehne (rhuehne) Assigned to: Nobody/Anonymous (nobody) Summary: 11.3.32 - Rocket coloring problem Initial Comment: I noticed a sometimes strange coloring of rockets in Jmol 11.3.32 compared to Jmol 11.3.15. Although it is not clear to me what the exact conditions are, I have found a reproducible way to provoke this problem with PDB entry 1A36: After loading the following URL http://www.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=1a36&JMOLVERSION=11.3.32 enter the following 2 command sets in the script input section: 1) select all; cartoon off; rockets on; color rockets grey; 2) set display selected; select SCOP_px15715; cartoon off; rockets on; color rockets cyan; After set 1 all rockets are grey as expected. But after set 2 one of the selected alpha helices is still colored grey while only the other one is colored cyan. If you do the same using Jmol 11.3.15 with the following URL http://www.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=1a36&JMOLVERSION=11.3.15 both selected alpha helices are colored cyan as expected. (Definition of SCOP_px15715: define SCOP_px15715 (641-712:A) & not solvent; ) If you enter only comand set 2) in Jmol 11.3.32 both selected helices are colored cyan. ---- Test System ---------------- Jmol : 11.3.32, applet 11.3.15, applet Java : 1.4.2_15 OS : Linux, OpenSuSE 10.2 Browser: Firefox 2.0.0.5 --------------------------------- ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1814039&group_id=23629 ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
