»»»JIJI«««.::::: wrote: > Dear All, > > > I have two models 1PRG.PDB and 4HHB.PDB, > > My probelm is , i want to create bond between suppose , > > SER A 123 (1PRG) <=> PRO B 34 (4HHB) > > So how to give the command with atomno and chain to build bond > > You cannot make bonds between models. If you need to do that, then load the two models as one:
set appendNew false load 1prg.pdb load append 4hhb.pdb This loads the second PDB file into the same frame (model) as the first. Then you can make bonds between the atoms in the different original PDB files. But you have to then be careful selecting atoms! I like to use atomIndex, because it is unique to an atom. To discover the atomIndex of an atom, simply click on it and from the console type: print _atomPicked Another option is to not make a bond but a measurement. This is a dotted line that can serve as a bond. Then with set measurementLabels OFF you can turn off the display of the number, and it looks a lot like a bond. Bob > > > > -- > Associate--LifeSciences > MASCON GLOBAL LTD > 758,Udyog Vihar Phase-5 > Gurgaon > Haryana -122016 > [EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]> > >------------------------------------------------------------------------ > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Microsoft >Defy all challenges. Microsoft(R) Visual Studio 2008. >http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > >------------------------------------------------------------------------ > >_______________________________________________ >Jmol-developers mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-developers > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
