Ok,
I think I found where the array index goes out of bounds, but I
don't see how. If I'm reading the following loop correctly the array
index is limited to the length of the array. Am I running into a bug
in the Apple JVM or something corrupt on my computer? I haven't
tried this on one of my Windows or Linux machines yet. Can somebody
please run the script attached to this bug report on one of their
machines and see if they get the same crash?
code snippet from at org.jmol.viewer.Eval.gotocmd
------
for (int i = 0; i < aatoken.length; i++) {
Token[] tokens = aatoken[i];
if (tokens[0].tok == Token.message)
if (tokens[1].value.toString().equalsIgnoreCase(strTo)) {
pcTo = i;
break;
}
-------
Thanks,
Jonathan
On Nov 13, 2008, at 1:09 PM, SourceForge.net wrote:
> Bugs item #2278015, was opened at 2008-11-13 13:09
> Message generated for change (Tracker Item Submitted) made by Item
> Submitter
> You can respond by visiting:
> https://sourceforge.net/tracker/?
> func=detail&atid=379133&aid=2278015&group_id=23629
>
> Please note that this message will contain a full copy of the
> comment thread,
> including the initial issue submission, for this request,
> not just the latest update.
> Category: Scripting
> Group: v11
> Status: Open
> Resolution: None
> Priority: 5
> Private: No
> Submitted By: Jonathan Gutow (gutow)
> Assigned to: Miguel (migueljmol)
> Summary: 11.6.4 "message loop [...] goto loop" only does one pass
>
> Initial Comment:
> The "message loop [...] goto loop" structure now only does one
> pass. An example script that fails and it's associated .pdb file
> is attached as a zip file.
>
> The program crashes (applet too) on reaching the goto with the
> following message:
> Exception in thread "QueueThread0"
> java.lang.ArrayIndexOutOfBoundsException: 0
> at org.jmol.viewer.Eval.gotocmd(Unknown Source)
> at org.jmol.viewer.Eval.instructionDispatchLoop(Unknown Source)
> at org.jmol.viewer.Eval.script(Unknown Source)
> at org.jmol.viewer.Eval.instructionDispatchLoop(Unknown Source)
> at org.jmol.viewer.Eval.runEval(Unknown Source)
> at org.jmol.viewer.Viewer.evalStringWaitStatus(Unknown Source)
> at org.jmol.viewer.ScriptManager$ScriptQueueRunnable.runScript
> (Unknown Source)
> at org.jmol.viewer.ScriptManager$ScriptQueueRunnable.runNextScript
> (Unknown Source)
> at org.jmol.viewer.ScriptManager$ScriptQueueRunnable.run(Unknown
> Source)
> at java.lang.Thread.run(Thread.java:613)
>
> ----------------------------------------------------------------------
>
> You can respond by visiting:
> https://sourceforge.net/tracker/?
> func=detail&atid=379133&aid=2278015&group_id=23629
>
> ----------------------------------------------------------------------
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Dr. Jonathan H. Gutow
Chemistry Department [EMAIL PROTECTED]
UW-Oshkosh Office:920-424-1326
800 Algoma Boulevard FAX:920-424-2042
Oshkosh, WI 54901
http://www.uwosh.edu/faculty_staff/gutow/
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