Hmm.
javascript:alert(jmolGetPropertyAsArray("atomInfo", "all")[2].elemno)
certainly works at
http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm
On Sun, Jul 5, 2009 at 3:42 PM, vikash jaiswal <[email protected]> wrote:
> Hello Everyone,
>
> I am trying to get the list of atoms of a structure using the jmol applet.
> I am using the method "jmolGetPropertyAsArray()" for the purpose. My code is
> provided lower in this mail.
> The application loads the applet and displays the protein structure but the
> atom list is not shown. It always returns the length as 0 for the list of
> atoms.
>
> Could someone please suggest what I may be doing wrong?
>
> Thanks in advance.
>
> Regards,
> Vikash
>
> Code:
>
> <head>
> <title>Trying to get atom names</title>
> <script src="../Jmol.js" type="text/javascript"></script>
> <script type="text/javascript">
> jmolInitialize("../");
> jmolSetAppletColor("black");
> jmolApplet(500 , "load 1MBA.pdb");
>
> var appletIDsuffix = "0";
> var applet
> var filePathName
> var fileType
> var fileName
>
> function atomident()
> {
> applet = document.getElementById("jmolApplet" + appletIDsuffix );
> var atoms= jmolGetPropertyAsArray("atomInfo","all");
> //var atoms=
> jmolGetPropertyAsArray("atomInfo","selected",appletIDsuffix);
> //var atoms = jmolGetPropertyAsJSON("atominfo", "atomno=1");
> //alert(jmolDecodeJSON(atoms));
> var tx = "Atoms list:<ol>";
> var tmpvk = atoms.length;
>
> for (var i=0; i<atoms.length;i++)
> { tx += "<li>" + elemName(atoms[i].elemno, atoms[i].sym);
> tx += " named " + atomName(atoms[i].name);
>
> tx += "</li>";
>
> }
> document.getElementById("result").innerHTML = tx + "</ol>" + tmpvk
> ;
> jmolScript("select none");
> }
>
> </script>
> </head>
> <body>
> <form>
> <br>
> <input type="button" value="Atom Data" onClick="atomident()">
>
> <br>
> this is the result area:
> <br>
> <table border="1">
> <tr>
> <td>
> <div id="result">...</div>
> </td>
> </tr>
> </table>
> </form>
> </body>
>
>
>
> ------------------------------------------------------------------------------
>
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>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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