Not sure what "during load" refers to, but
label %4.0[color] %3.2[vdw]
gets you rgb colors and van der Waals radii.
label %4.0[color] %3.2[radius]
gets you the same with instead the current spacefill radius
you can set the atom color using a script:
{atomindex=1}.color = "[xFF00FF]"
{atomindex=2}.color = "red"
{atomindex=1}.color = "[128 0 128]"
that sort of thing. Similarly, you can set radii using, for example,
{atomindex=33}.radius = 2.0
Bob
On Thu, Nov 12, 2009 at 2:19 PM, Joe Gatewood <[email protected]> wrote:
> I have spent some time looking for the syntax to use to set the color and
> radius of an individual atom at load time.
>
> For example in one of my use cases I am building up the model one atom at a
> time and loading using evalScript("|K 10 3 20|...")
> Can I set the color and radius of each atom as part of the atom descriptor?
>
> I enjoyed the web content (discussion) on Jmol colors. I can set the color
> with select fine but did not find documentation on setting single atom
> color
> during load.
>
> Thanks,
> Joe
>
>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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