Hello, I need to alter the format of the hover label. I have a message that is more than one line and will, perhaps, have a weblink inside. I searched the forums, and I found the following line:
set hoverLabel "label format" What are the options and syntax for the label format? Thanks! Aya On Fri, Dec 25, 2009 at 9:32 PM, Robert Hanson <[email protected]> wrote: > Well, if you want to get information back from Jmol, the easiest way is > using jmolEvaluate: > > <script type="text/javascript"> > var x = jmolEvaluate('script("for(var i = 0; i < 10;i++){print i}")') > </script> > > note the careful use of single and double quotes. You can avoid some of > that complexity by first defining the script: > > var script = 'script("for(var i = 0; i < 10;i++){print i}")' > var x = jmolEvaluate(script) > > so for my script it would be: > > var script = 'script(" for (var i = 0; i < site_list.length; i++) {script > inline @{\'select atomIndex = _atomhovered and \' + site_list[i]};if > ({selected}) {print site_list[i] }}")' > var x = jmolEvaluate(script) > > (I think) > > Or you could first get all the information with > > var info = jmolEvaluate('getProperty("stateInfo")') > > and then work from there. > > Bob > > > > > On Fri, Dec 25, 2009 at 1:08 PM, Aya <[email protected]> wrote: > >> Hello, >> I'm not understanding a fundamental part, and I think this is why I am >> having such troubles. >> >> >> > Decoding that, I see: >> > >> > if ({atomIndex=_atomHovered}&{site1}) { >> > hover "default1"; select site1; halos 25%;color halos red; select all; >> > } else if ({atomIndex=_atomHovered}&!{site1}) { >> > hover %U; select site1; halos off >> > } >> >> So this is a clip of what I have in the head of my page: >> >> <script language="javascript"> >> function customhover(){ >> >> if(myListL.options[1].selected == true){ jmolScript( >> 'if ({atomIndex=_atomHovered}&{site1}); ' + >> 'hover "default1"; select site1; halos >> 25%;color halos red; select all;' + >> 'else if ({atomIndex=_atomHovered}&!{site1}); ' + >> 'hover %U; select site1; halos off;' + >> 'end if; ',"LeftApplet") >> } >> } >> </script> >> >> >> And here in the end of the body: >> >> <script type="text/javascript"> >> jmolApplet([410,480],'load jmol/models/practice.pdb;set >> hoverCallback "customhover"; define site1 atomno=1; define site2 >> atomno=2;','LeftApplet') >> </script> >> >> >> How do I run the script as you have suggested? >> As for the last part ...hm. I know "@" allows you to define a variable >> and I see you've made an array of sites... >> Thank you! >> Aya >> >> >> >> >> >> >> >> >> >> On Fri, Dec 25, 2009 at 3:54 PM, Robert Hanson <[email protected]> >> wrote: >> > >> > >> > On Fri, Dec 25, 2009 at 4:56 AM, Aya <[email protected]> wrote: >> >> >> >> Hello, >> >> I am making a webpage in which the molecule has some 10 sites (defined >> >> as site1, site2 ... upon loading the applet ), and the user can select >> >> which site(s) he wants to view (the halos get turned on and an >> >> isosurface gets generated). When the mouse hovers over a site that >> >> has been selected, I want a specific hover message to appear. >> >> Additionally, some atoms may belong to more than one site. In this >> >> case, the hover message must append additional information. >> >> >> >> Here is one attempt at this. This code is within my custom hover >> >> function called by the set hovercallback: >> >> if(myListL.options[1].selected == true){jmolScript( >> >> 'if ({atomIndex=_atomHovered}&{site1}); ' + >> >> 'hover "default1"; select site1; halos >> >> 25%;color halos red; select all;' + >> >> 'else if ({atomIndex=_atomHovered}&!{site1}); ' >> + >> >> 'hover %U; select site1; halos off;' + >> >> 'end if; ',"Leftapplet")} >> >> >> > >> > Decoding that, I see: >> > >> > if ({atomIndex=_atomHovered}&{site1}) { >> > hover "default1"; select site1; halos 25%;color halos red; select all; >> > } else if ({atomIndex=_atomHovered}&!{site1}) { >> > hover %U; select site1; halos off >> > } >> > >> > >> >> This says that if the first site is selected and the first site is >> >> being hovered, there is the custom message, if it's anything But >> >> site1, then hover is normal. This does not solve the problem! For >> >> several reasons. What I need to do is include a some kind of >> >> jmolScript that will Return a boolean if the atom hovered is part of >> >> site1, site2.. (as in, a jmol script that will evaluate >> >> ({atomIndex=_atomHovered}&{site1}) ) OR some kind of jmol script that >> >> will return the sites that the atom hovered belongs to OR maybe a way >> >> to insert variables into the jmolScript that have been defined in the >> >> previous javascript. OR any other suggestion you may have! >> >> >> > >> > for (var i = 0; i < site_list.length; i++) {script inline @{"select " + >> > site_list[i]};print {selected}} >> > >> > This gives all the atoms in each site. So if you could use: >> > >> > for (var i = 0; i < site_list.length; i++) { >> > script inline @{"select atomIndex = _atomhovered and " + site_list[i]} >> > if ({selected}) { >> > print site_list[i] >> > } >> > } >> > >> > >> > That would at least get you the list. >> > >> > A slicker option would be to read the state once after file loading and >> then >> > parse it for the information you want: >> > >> > @site_1 ({299:314 334:384 719:734 754:804 1139:1154 1174:1224 >> 1559:1574 >> > 1594:1644 1979:1994 2014:2064 2399:2414 2434:2484 2819:2834 2854:2904 >> > 3239:3254 3274:3324 3659:3674 3694:3744 4079:4094 4114:4164 4499:4514 >> > 4534:4584 4919:4934 4954:5004 5339:5354 5374:5424 5759:5774 5794:5844 >> > 6179:6194 6214:6264}); >> > @site_ac1 ({19:34 439:454 859:874 1279:1294 1699:1714 2119:2134 >> 2539:2554 >> > 2959:2974 3379:3394 3799:3814 4219:4234 4639:4654 5059:5074 5479:5494 >> > 5899:5914}); >> > @site_ac2 ({0:18 35:53 420:438 455:473 840:858 875:893 1260:1278 >> 1295:1313 >> > 1680:1698 1715:1733 2100:2118 2135:2153 2520:2538 2555:2573 2940:2958 >> > 2975:2993 3360:3378 3395:3413 3780:3798 3815:3833 4200:4218 4235:4253 >> > 4620:4638 4655:4673 5040:5058 5075:5093 5460:5478 5495:5513 5880:5898 >> > 5915:5933}); >> > ... >> > site_ac1 = ["[IDS]2:A"]; >> > site_ac2 = ["[SGN]1:A", "[SGN]3:A"]; >> > site_ac3 = ["[IDS]2:A", "[IDS]4:A", "[SGN]5:A", "[IDS]6:A"]; >> > ... >> > site_list = ["site_BC9", "site_BC8", "site_BC7", "site_BC6", >> "site_BC5", >> > "site_BC4", "site_BC3", "site_BC2", "site_BC1", "site_AC9", "site_AC8", >> > "site_AC7", "site_AC6", "site_AC5", "site_AC4", "site_AC3", "site_AC2", >> > "site_CC6", "site_AC1", "site_CC5", "site_CC4", "site_CC3", "site_CC2", >> > "site_CC1"]; >> > >> > >> > Bob >> > >> > >> >> Thank you kindly for your help! >> >> Aya >> >> >> >> >> >> >> ------------------------------------------------------------------------------ >> >> This SF.Net email is sponsored by the Verizon Developer Community >> >> Take advantage of Verizon's best-in-class app development support >> >> A streamlined, 14 day to market process makes app distribution fast and >> >> easy >> >> Join now and get one step closer to millions of Verizon customers >> >> http://p.sf.net/sfu/verizon-dev2dev >> >> _______________________________________________ >> >> Jmol-developers mailing list >> >> [email protected] >> >> https://lists.sourceforge.net/lists/listinfo/jmol-developers >> > >> > >> > >> > -- >> > Robert M. Hanson >> > Professor of Chemistry >> > St. Olaf College >> > 1520 St. Olaf Ave. >> > Northfield, MN 55057 >> > http://www.stolaf.edu/people/hansonr >> > phone: 507-786-3107 >> > >> > >> > If nature does not answer first what we want, >> > it is better to take what answer we get. >> > >> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> > >> > >> ------------------------------------------------------------------------------ >> > This SF.Net email is sponsored by the Verizon Developer Community >> > Take advantage of Verizon's best-in-class app development support >> > A streamlined, 14 day to market process makes app distribution fast and >> easy >> > Join now and get one step closer to millions of Verizon customers >> > http://p.sf.net/sfu/verizon-dev2dev >> > _______________________________________________ >> > Jmol-developers mailing list >> > [email protected] >> > https://lists.sourceforge.net/lists/listinfo/jmol-developers >> > >> > >> >> >> >> ------------------------------------------------------------------------------ >> This SF.Net email is sponsored by the Verizon Developer Community >> Take advantage of Verizon's best-in-class app development support >> A streamlined, 14 day to market process makes app distribution fast and >> easy >> Join now and get one step closer to millions of Verizon customers >> http://p.sf.net/sfu/verizon-dev2dev >> _______________________________________________ >> Jmol-developers mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/jmol-developers >> >> > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > ------------------------------------------------------------------------------ > This SF.Net email is sponsored by the Verizon Developer Community > Take advantage of Verizon's best-in-class app development support > A streamlined, 14 day to market process makes app distribution fast and > easy > Join now and get one step closer to millions of Verizon customers > http://p.sf.net/sfu/verizon-dev2dev > _______________________________________________ > Jmol-developers mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-developers > >
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